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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGGCCACGGCTTGCAGCTGCCGATCGAGACCGGCGGTGACGACGACGACACCGGCTACGACGAGTGCATCGTGCCCTGCGACATGAACCTGATCAAAGgtgatatcggagacaaacacctgatctctcgctaacacccagtatatatggctatcactcatttgacacgagagctggatgatgcag

Basic information

species Oryza sativa
transcript LOC_Os05g41660.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g41660.1 (Oryza sativa), 5'ss of exon 1
lower sequence: Vv19s0085g01030.t01 (Vitis vinifera), 5'ss of exon 1
---AGTGGCCACGGCTTGCAGCTGCCGATCGAGACCGGCGGTGACGACGACGACACCGGCTACGACGAGTGCATCGTGCCCTGCGACATGAACCTGATCAAAGgt-gatatcggagacaaacacctgatctctcgctaacacccagtatatatggctatcactc--atttgacacgagagctg-gatgatgcag------
   || |||||||||   |  || ||   ||||||||| |   | |||||||||||||||||||||||||||||||| ||    |||||||| || || |  |||  | |||  | |        | || || | ||  || |   |   | |  |||   ||   |    |    |   ||| || | |          
TACAGCGGCCACGGCACTCGACTCCCTGCCGAGACCGGAG---AGGACGACGACACCGGCTACGACGAGTGCATCGTCCCTACTGACATGAATCTTATTACCGgtcaaaatcacaaattcttctttcatttccctct--catctcatcgttttctctaattctgggagccaaagtaatgactgtgacggtttgttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|117218441|gb|CT858175.1|CT858175
EST:     CATCGGCTACGACGAGTGCATCGTGCCCTGCGACATGAACCTGATCAAAG                         ACCAAGATTTCACGGAGCTCGTGCAGAAAGTCCCGGATGGCTGCCTGTTCA
genomic: CACCGGCTACGACGAGTGCATCGTGCCCTGCGACATGAACCTGATCAAAGgtgatatcgg ... gatgatgcagACCAAGATTTCACGGAGCTCGTGCAGAAAGTCCCGGATGGCTGCCTGTTCA