1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCCGCCCATTCGCGCCGCCGCCGCAGAAGCCACCGCGCCCCGCAGCTCTCGTCGTCGTCGCCGCGGCCGCTCGATCACGATGGCTCCCACCAAGAAGGCGgtaaggttcctgatcgattgcgcctccctccccctcctcgtcgcgctctcccgctgcgcatctcaccatttcgttgcgatgtttttgctggtttctgattggtgggttgtggcgatgatgcag
species | Oryza sativa |
transcript | LOC_Os05g41110.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCGATCACGATGGCTCCCACCAAGAAGGCG AAGAAGAGCACGGACAACATCAACAACAAGCTGCAGCTGGTGATGAAGAGCEST: gi|30228744|gb|CB966634.1|CB966634
genomic: TCGATCACGATGGCTCCCACCAAGAAGGCGgtaaggttcc ... gatgatgcagAAGAAGAGCACGGACAACATCAACAACAAGCTGCAGCTGGTGATGAAGAGC
EST: GCTCGATCACGATGGCTCCCACCAAGAAGGCG AAGAAGAGCACGGACAACATCAACAACAAGCTGCAGCTGGTGATGAAGAGCEST: gi|14981077|gb|BI305768.1|BI305768
genomic: GCTCGATCACGATGGCTCCCACCAAGAAGGCGgtaaggttcc ... gatgatgcagAAGAAGAGCACGGACAACATCAACAACAAGCTGCAGCTGGTGATGAAGAGC
EST: CGATCACGATGGGCTCCCACCAAGAAGGCG AAGAAGAGCACGGACAACATCAACAACAAGCTGCAGCTGGTGATGAAGAGCEST: gi|27578251|gb|CB000946.1|CB000946
genomic: CGATCACGAT-GGCTCCCACCAAGAAGGCGgtaaggttcc ... gatgatgcagAAGAAGAGCACGGACAACATCAACAACAAGCTGCAGCTGGTGATGAAGAGC
EST: GTCGTCGTCGCCGCGGCCGCTCGATCACGATGGCTCCCACCAAGAAGGCG AAGAAGAGCACGGACAACATCAACAACAAGCTGCAGCTGGTGATGAAGAGCEST: gi|30228625|gb|CB966515.1|CB966515
genomic: GTCGTCGTCGCCGCGGCCGCTCGATCACGATGGCTCCCACCAAGAAGGCGgtaaggttcc ... gatgatgcagAAGAAGAGCACGGACAACATCAACAACAAGCTGCAGCTGGTGATGAAGAGC
EST: GATCACGATGGCTCCCACCAAGAAGGCG AAGAAGAGCACGGACAACATCAACAACAAGCTGCAGCTGGTGATGAAGAGCEST: gi|58594776|gb|CF993084.1|CF993084
genomic: GATCACGATGGCTCCCACCAAGAAGGCGgtaaggttcc ... gatgatgcagAAGAAGAGCACGGACAACATCAACAACAAGCTGCAGCTGGTGATGAAGAGC
EST: GTCGTCGTCGCCGCGGCCGCTCGATCACGATGGCTCCCACCAAGAAGGCG AAGAAGAGCACGGACAACATCAACAACAAGCTGCAGCTGGTGATGAAGAGCEST: gi|87032220|gb|CI262002.1|CI262002
genomic: GTCGTCGTCGCCGCGGCCGCTCGATCACGATGGCTCCCACCAAGAAGGCGgtaaggttcc ... gatgatgcagAAGAAGAGCACGGACAACATCAACAACAAGCTGCAGCTGGTGATGAAGAGC
EST: GATGGCTCCCACCAAGAAGGCG AAGAAGAGCACGGACAACATCAACAACAAGCTGCAGCTGGTGATGAAGAGCEST: gi|86593179|gb|CI255641.1|CI255641
genomic: GATGGCTCCCACCAAGAAGGCGgtaaggttcc ... gatgatgcagAAGAAGAGCACGGACAACATCAACAACAAGCTGCAGCTGGTGATGAAGAGC
EST: GTCGTCGTCGACGCGGCCGCTCGATCACGATGGCTCCCACCAAGAAGGCG AAGAAGAGCACGGACAACATCAACAACAAGCTGCAGCTGGTGATGAAGAGCEST: gi|53553193|gb|CO435745.1|CO435745
genomic: GTCGTCGTCGCCGCGGCCGCTCGATCACGATGGCTCCCACCAAGAAGGCGgtaaggttcc ... gatgatgcagAAGAAGAGCACGGACAACATCAACAACAAGCTGCAGCTGGTGATGAAGAGC
EST: GTCGTCGTCGCCGCGGCCGCTCGATCACGATGGCTCCCACCAAGAAGGCG AAGAAGAGCACGGACAACATCAACAACAAGCTGCAGCTGGTGATGAAGAGCEST: gi|29686201|gb|CB682476.1|CB682476
genomic: GTCGTCGTCGCCGCGGCCGCTCGATCACGATGGCTCCCACCAAGAAGGCGgtaaggttcc ... gatgatgcagAAGAAGAGCACGGACAACATCAACAACAAGCTGCAGCTGGTGATGAAGAGC
EST: GCCGCGGCCGCTCGATCACGATGGCTCCCACCAAGAAGGCG AAGAAGAGCACGGACAACATCAACAACAAGCTGCAGCTGGTGATGAAGAGCEST: gi|86530215|gb|CI170421.1|CI170421
genomic: GCCGCGGCCGCTCGATCACGATGGCTCCCACCAAGAAGGCGgtaaggttcc ... gatgatgcagAAGAAGAGCACGGACAACATCAACAACAAGCTGCAGCTGGTGATGAAGAGC
EST: ACGATGGCTCCCACCAAGAAGGCG AAGAAGAGCACGGACAACATCAACAACAAGCTGCAGCTGGTGATGAAGAGCEST: gi|58031073|gb|CX728616.1|CX728616
genomic: ACGATGGCTCCCACCAAGAAGGCGgtaaggttcc ... gatgatgcagAAGAAGAGCACGGACAACATCAACAACAAGCTGCAGCTGGTGATGAAGAGC
EST: GTCGTCGTCGCCGCGGCCGCTCGATCACGATGGCTCCCACCAAGAAGGCG AAGAAGAGCACGGACAACATCAACAACAAGCTGCAGCTGGTGATGAAGAGCEST: gi|87011660|gb|CI281362.1|CI281362
genomic: GTCGTCGTCGCCGCGGCCGCTCGATCACGATGGCTCCCACCAAGAAGGCGgtaaggttcc ... gatgatgcagAAGAAGAGCACGGACAACATCAACAACAAGCTGCAGCTGGTGATGAAGAGC
EST: CGATCACGATGGCTCCCACCAAGAAGGCG AAGAAGAGCACGGACAACATCAACAACAAGCTGCAGCTGGTGATGAAGAGCEST: gi|88400326|gb|CI591016.1|CI591016
genomic: CGATCACGATGGCTCCCACCAAGAAGGCGgtaaggttcc ... gatgatgcagAAGAAGAGCACGGACAACATCAACAACAAGCTGCAGCTGGTGATGAAGAGC
EST: GTCGTCGTCGCCGCGGCCGCTCGATCACGATGGCTCCCACCAAGAAGGCG AAGAAGAGCACGGACAACATCAACAACAAGCTGCAGCTGGTGATGAAGAGCEST: gi|55410942|gb|CV723318.1|CV723318
genomic: GTCGTCGTCGCCGCGGCCGCTCGATCACGATGGCTCCCACCAAGAAGGCGgtaaggttcc ... gatgatgcagAAGAAGAGCACGGACAACATCAACAACAAGCTGCAGCTGGTGATGAAGAGC
EST: GTCGTCGTCGCCGCGGCCGCTCGATCACGATGGCTCCCACCAAGAAGGCG AAGAAGAGCACGGACAACATCAACAACAAGCTGCAGCTGGTGATGAAGAGCEST: gi|86416886|gb|CI030897.1|CI030897
genomic: GTCGTCGTCGCCGCGGCCGCTCGATCACGATGGCTCCCACCAAGAAGGCGgtaaggttcc ... gatgatgcagAAGAAGAGCACGGACAACATCAACAACAAGCTGCAGCTGGTGATGAAGAGC
EST: CGCCGCGGCCGCTCGATCACGATGGCTCCCACCAAGAAGGCG AAGAAGAGCACGGACAACATCAACAACAAGCTGCAGCTGGTGATGAAGAGCEST: gi|88991955|gb|CI035093.1|CI035093
genomic: CGCCGCGGCCGCTCGATCACGATGGCTCCCACCAAGAAGGCGgtaaggttcc ... gatgatgcagAAGAAGAGCACGGACAACATCAACAACAAGCTGCAGCTGGTGATGAAGAGC
EST: CCGCTCGATCACGATGGCTCCCACCAAGAAGGCG AAGAAGAGCACGGACAACATCAACAACAAGCTGCAGCTGGTGATGAAGAGC
genomic: CCGCTCGATCACGATGGCTCCCACCAAGAAGGCGgtaaggttcc ... gatgatgcagAAGAAGAGCACGGACAACATCAACAACAAGCTGCAGCTGGTGATGAAGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCGCCCATTCGCGCCGCCGCCGCAGAAGCCACCGCGCCCCGCAGCTCTCGTCGTCGTCGCCGCGGCCGCTCGATCACGATGGCTCCCACCAAGAAGGCGgtaaggttcctgatcgattgcgcctccctccccctcctcgtcgcgctctcccgctgcgcatctcaccatttcgttgcgatgtttttgctggtttctgattggtgggttgtggcgatgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG