1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAAACCCTCGCGGAGCACACGCTGCTCCCCCCTCTCCCTCCCGCGCCGCCGCCGCCGCCGCCACCGCCGCATCGCCGCTGCCGACGGCTGCGCTCCGAAGgtatcgcgtcgaaatgctcttcgtctcgcctctaccaccgccgcagatagttcttgcagcgtctatgcctctgctgccctttacatttccctcgagcgac...
species | Oryza sativa |
transcript | LOC_Os05g40820.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCCGCCACCGCCGCATCGCCGCTGCCGACGGCTGCGCTCCGAAG AATTCTGTGAGGATTTAAGCTGAGAAGATGGTGCTGAAEST: gi|33810488|gb|CF331132.1|CF331132
genomic: GCCGCCACCGCCGCATCGCCGCTGCCGACGGCTGCGCTCCGAAGgtatcgcgtc ... aatttggcagAATTCTGTGAGGATTTAAGCTGAGAAGATGGTGCTGAA
EST: ACGGCTGCGCTCCGAAG AATTCTGTGAGGATTTAAGCTGAGAAGATGGTGCTGAAEST: gi|8324524|gb|AU091671.1|AU091671
genomic: ACGGCTGCGCTCCGAAGgtatcgcgtc ... aatttggcagAATTCTGTGAGGATTTAAGCTGAGAAGATGGTGCTGAA
EST: ACGG-TGCGCTCCGAAG AATTCTGTGAGGATTTAAGCTGAGAAGATGGTGCTGAAEST: gi|5607423|gb|AU076121.1|AU076121
genomic: ACGGCTGCGCTCCGAAGgtatcgcgtc ... aatttggcagAATTCTGTGAGGATTTAAGCTGAGAAGATGGTGCTGAA
EST: TGCGGTCCAAAG -ATTCTGTGAGGATTTAAGCTGAGAAGATGGTGCTGAAEST: gi|88397656|gb|CI684589.1|CI684589
genomic: TGCGCTCCGAAGgtatcgcgtc ... aatttggcagAATTCTGTGAGGATTTAAGCTGAGAAGATGGTGCTGAA
EST: ACGGCTGCGCTCCGAAG AATTCTGTGAGTATTTAAGCTGAGAAGATGGTGCTGAA
genomic: ACGGCTGCGCTCCGAAGgtatcgcgtc ... aatttggcagAATTCTGTGAGGATTTAAGCTGAGAAGATGGTGCTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAACCCTCGCGGAGCACACGCTGCTCCCCCCTCTCCCTCCCGCGCCGCCGCCGCCGCCGCCACCGCCGCATCGCCGCTGCCGACGGCTGCGCTCCGAAGgtatcgcgtcgaaatgctcttcgtctcgcctctaccaccgccgcagatagttcttgcagcgtctatgcctctgctgccctttacatttccctcgagcgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctctacc
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