Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCCAATCGCCAAAACCCTAACTCCGATCCGATCGAGCTCTGCTTCCCATGGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcggaacggccccccgtgcaatcttatctcgtctaatctcctatttttttttttggtcccgattcgtcggcgatcggttcttgatcttggcccgcctttttgcgggatcgttgcag

Basic information

species Oryza sativa
transcript LOC_Os05g38550.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g38550.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G007276_T01 (Zea mays), 5'ss of exon 1
CCCCAATCGCCAAAACCCTAACTCCGATCCGATCGAG---CTCTGCTTCC---CATGGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcggaacggccccccgtgcaatcttatctcgtctaatctcctatttttttttttggtcccgattcgtcggcgatcggttcttgatcttggcccgcctttttgcgggatcgttgcag
      |||||||||||||| | |||||||| |||||   | || ||||    |||||||    || | |||||||| |||||||||||||||||||||||||| |||||||||| |||||||| |  |  |             ||  |||||     |   |||| | | ||||| | || ||||||| | |||||||   |  || || ||    | | ||     
------TCGCCAAAACCCTAGCCCCGATCCGGTCGAGGAGCACTACTTCTTGGCATGGCGGGCACCCCTAGCCAGGCAAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatccgaacggcctcttgctc-------------ctgctctccc---ctcccttttcgcctcgatttgccg-cgatcggctgttgatctct-cgagctttctttgttggttgt-----

upper sequence: LOC_Os05g38550.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G007276_T03 (Zea mays), 5'ss of exon 1
CCCCAATCGCCAAAACCCTAACTCCGATCCGATCGAG---CTCTGCTTCC---CATGGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcggaacggccccccgtgcaatcttatctcgtctaatctcctatttttttttttggtcccgattcgtcggcgatcggttcttgatcttggcccgcctttttgcgggatcgttgcag
      |||||||||||||| | |||||||| |||||   | || ||||    |||||||    || | |||||||| |||||||||||||||||||||||||| |||||||||| |||||||| |  |  |             ||  |||||     |   |||| | | ||||| | || ||||||| | |||||||   |  || || ||    | | || ||||
------TCGCCAAAACCCTAGCCCCGATCCGGTCGAGGAGCACTACTTCTTGGCATGGCGGGCACCCCTAGCCAGGCAAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatccgaacggcctcttgctc-------------ctgctctccc---ctcccttttcgcctcgatttgccg-cgatcggctgttgatctct-cgagctttctttgttggttgtcgcag

upper sequence: LOC_Os05g38550.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G007276_T02 (Zea mays), 5'ss of exon 1
-------------------------CCCCAATCGCCAAAACCCTAACTCCGATCCGATCGAG---CTCTGCTTCC---CATGGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcggaacggccccccgtgcaatcttatctcgtctaatctcctatttttttttttggtcccgattcgtcggcgatcggttcttgatcttggcccgcctttttgcgggatcgttgcag
                           || ||||||||||||||| | |||||||| |||||   | || ||||    |||||||    || | |||||||| |||||||||||||||||||||||||| |||||||||| |||||||| |  |  |             ||  |||||     |   |||| | | ||||| | || ||||||| |                                     
GCTCCTCCGCGGGGCGGCGAACTACTACCCATCGCCAAAACCCTAGCCCCGATCCGGTCGAGGAGCACTACTTCTTGGCATGGCGGGCACCCCTAGCCAGgcaagcctcctgctccagaagcagctcaagggtacggatccgaacggcctcttgctc-------------ctgctctccc---ctcccttttcgcctcgatttgccg-cgatcggct-------------------------------------

upper sequence: LOC_Os05g38550.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G012052_T01 (Zea mays), 5'ss of exon 1
------------CCCCAATCGCCAAAACCCTAACTCCGATCCGATCGAGCTCTGCTTCCCATGGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcggaacggccccccgtgcaatcttatctcgtctaatctcctatttttttttttggtcccgattcgtcggcgatcggttcttgatcttggcccgcctttttgcgggatcgttgcag
             ||   |||||||||||||| | | | | |             || |||||||||    ||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||| |                    |||  |||||     |  ||||| | | ||||| | || ||||||| || |||| |   |   | || ||    | | ||  |||
GCGGCGAACTACTCCTCGTCGCCAAAACCCTAGCCCTGCTTC------------TTTGCCATGGCGAGCAGCGCTAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAGGgtacggatccgaacggtct-------------------tctgctctccc---ctcctttttcgcctcgatttgccg-cgatcggctcctgatatct-cgaacgttctttgttgcttgtcacag

upper sequence: LOC_Os05g38550.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA15G04470.1 (Glycine max), 5'ss of exon 1
CCCCAATCGCCAAAACCCTAACTCCGATCCGATCGAGCTCT---GCTTCCCATGGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcggaacggccccccgtgcaatcttatctcgtctaatctcctatttttttttttggtcccgattcgtcggcgatcggttcttgatcttggcccgcctttttgcgggatcgttgcag
 |    ||||  || | |  |     |  | |  |||| ||    ||  |  || ||      |||   || ||||||||||| || |||||||||||||||||| |    |    | || |||      | |  |||   ||   | ||    |||   | || |    ||||  || ||   |   | ||||  |||  |  || |||   |            
-CTTCTTCGC--AATCTCAGAACAGAACACAACAGAGCCCTTCAACTCTCTCTGTCGTTGATGGCGTCACAAGCGAGCCTCCTTCTTCAGAAGCAGCTCAAAGgtgccc-cctaccctgcgccctccctcacccgatcaactccc-tttctctctttccgtcttagcgtggattt-tccgcaccc---ttttga--ttgatcttccctttgatgcag---------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|55414096|gb|CV726472.1|CV726472
EST:     GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|55442235|gb|CV734437.1|CV734437
EST:     GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|33692575|gb|CF320814.1|CF320814
EST:     GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|3760645|gb|C97899.1|C97899
EST:     GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|33655770|gb|CF278384.1|CF278384
EST:     GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|88430899|gb|CI571889.1|CI571889
EST:     GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|33810432|gb|CF331103.1|CF331103
EST:     GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|29673156|gb|CB669431.1|CB669431
EST:     GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTGCTCGGCGGGGCTTGTGGACAATA
genomic: GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|33653883|gb|CF276497.1|CF276497
EST:     GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|58679873|gb|CK068560.1|CK068560
EST:     GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|55409814|gb|CV722190.1|CV722190
EST:     GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|88388205|gb|CI627744.1|CI627744
EST:     GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|33658680|gb|CF281293.1|CF281293
EST:     GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|33653639|gb|CF276253.1|CF276253
EST:     GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|88390199|gb|CI605652.1|CI605652
EST:     GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|33658073|gb|CF280687.1|CF280687
EST:     GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|88736853|gb|CI760361.1|CI760361
EST:     GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|58590916|gb|CF989224.1|CF989224
EST:     GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|32948017|gb|BP184589.1|BP184589
EST:     GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|88288557|gb|CI663346.1|CI663346
EST:     GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|33687042|gb|CF315281.1|CF315281
EST:     GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|33690680|gb|CF318919.1|CF318919
EST:     GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|88570068|gb|CI661243.1|CI661243
EST:     GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|55431282|gb|CV728654.1|CV728654
EST:     GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|29688854|gb|CB685129.1|CB685129
EST:     GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|8857894|gb|AU095212.1|AU095212
EST:     GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|33659205|gb|CF281818.1|CF281818
EST:     GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|29680263|gb|CB676538.1|CB676538
EST:     GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|33658853|gb|CF281466.1|CF281466
EST:     GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|66916172|gb|CX103020.1|CX103020
EST:     GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|4880952|gb|AU065251.1|AU065251
EST:     GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|87023663|gb|CI286414.1|CI286414
EST:     GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|33662052|gb|CF293019.1|CF293019
EST:     GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|29685176|gb|CB681451.1|CB681451
EST:     GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|33655754|gb|CF278368.1|CF278368
EST:     GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|33691669|gb|CF319908.1|CF319908
EST:     GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|29684701|gb|CB680976.1|CB680976
EST:     GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|29685177|gb|CB681452.1|CB681452
EST:     CGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: CGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|58673748|gb|CK062434.1|CK062434
EST:     TGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: -GCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|33654768|gb|CF277382.1|CF277382
EST:     GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
EST: gi|29684702|gb|CB680977.1|CB680977
EST:     GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAG                         ATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA
genomic: GGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 75 (downstream exon)
Score: 73

CCCCAATCGCCAAAACCCTAACTCCGATCCGATCGAGCTCTGCTTCCCATGGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcg ... atcgttgcagATCTCGCGAAGAACCCCGTGGATGGGTTCTCGGCGGGGCTTGTGGACGATAGCAACGTGTTCGAGTGGCAGGTCACCATCATCGGCCCGCCCGATACCCT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCCCAATCGCCAAAACCCTAACTCCGATCCGATCGAGCTCTGCTTCCCATGGCGACTGCCGCGAGCCAGGCGAGCCTCCTGCTCCAGAAGCAGCTCAAAGgtacggatcggaacggccccccgtgcaatcttatctcgtctaatctcctatttttttttttggtcccgattcgtcggcgatcggttcttgatcttggcccgcctttttgcgggatcgttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA