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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATTGCTCGGTTCTCCCGCGGGCGGCGGCGAGCCGGCGAGGGCTTCTCCGGTGGGGGGCGGCGAGCTATCCTAGCGCCCGCCTTGGGAGCGCTCTCGCGgtacgtgtctgctgttgccccccagctggctcgattggctcttttcgattcgggcgtgttccaatctggtgtaccttgaacagttcgatttcgcgagcga...

Basic information

species Oryza sativa
transcript LOC_Os05g38370.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58653405|gb|CK042085.1|CK042085
EST:     GGTGGGGGGCGGCGAGCTATCCTAGCGCCCGCCTTGGGAGCGCTCTCGCG                         GATCTCCTTTGGAGCTTTGATAGCATAGCAAGGTCATGGCAGAGGTTGCAG
genomic: GGTGGGGGGCGGCGAGCTATCCTAGCGCCCGCCTTGGGAGCGCTCTCGCGgtacgtgtct ... aatcacccagGATCTCCTTTGGAGCTTTGATAGCATAGCAAGGTCATGGCAGAGGTTGCAG
EST: gi|87012835|gb|CI297062.1|CI297062
EST:     GGTGGGGGGCGGCGAGCTATCCTAGCGCCCGCCTTGGGAGCGCTCTCGCG                         GATCTCCTTTGGAGCTTTGATAGCATAGCAAGGTCATGGCAGAGGTTGCAG
genomic: GGTGGGGGGCGGCGAGCTATCCTAGCGCCCGCCTTGGGAGCGCTCTCGCGgtacgtgtct ... aatcacccagGATCTCCTTTGGAGCTTTGATAGCATAGCAAGGTCATGGCAGAGGTTGCAG
EST: gi|58670906|gb|CK059592.1|CK059592
EST:     GGTGGGGGGCGGCGAGCTATCCTAGCGCCCGCCTTGGGAGCGCTCTCGCG                         GATCTCCTTTGGAGCTTTGATAGCATAGCAAGGTCATGGCAGAGGTTGCAG
genomic: GGTGGGGGGCGGCGAGCTATCCTAGCGCCCGCCTTGGGAGCGCTCTCGCGgtacgtgtct ... aatcacccagGATCTCCTTTGGAGCTTTGATAGCATAGCAAGGTCATGGCAGAGGTTGCAG
EST: gi|88382451|gb|CI633309.1|CI633309
EST:     GGTGGGGGGCGGCGAGCTATCCTAGCGCCCGCCTTGGGAGCGCTCTCGCG                         GATCTCCTTTGGAGCTTTGATAGCATAGCAAGGTCATGGCAGAGGTTGCAG
genomic: GGTGGGGGGCGGCGAGCTATCCTAGCGCCCGCCTTGGGAGCGCTCTCGCGgtacgtgtct ... aatcacccagGATCTCCTTTGGAGCTTTGATAGCATAGCAAGGTCATGGCAGAGGTTGCAG
EST: gi|58676992|gb|CK065679.1|CK065679
EST:     GGTGGGGGGCGGCGAGCTATCCTAGCGCCCGCCTTGGGAGCGCTCTCGCG                         GATCTCCTTTGGAGCTTTGATAGCATAGCAAGGTCATGGCAGAGGTTGCAG
genomic: GGTGGGGGGCGGCGAGCTATCCTAGCGCCCGCCTTGGGAGCGCTCTCGCGgtacgtgtct ... aatcacccagGATCTCCTTTGGAGCTTTGATAGCATAGCAAGGTCATGGCAGAGGTTGCAG
EST: gi|38477211|gb|CF961344.1|CF961344
EST:     GCCCGCCTTGGGAGCGCTCTCGCG                         GATCTCCTTTGGAGCTTTGATAGCATAGCAAGGTCATGGCAGAGGTTGCAG
genomic: GCCCGCCTTGGGAGCGCTCTCGCGgtacgtgtct ... aatcacccagGATCTCCTTTGGAGCTTTGATAGCATAGCAAGGTCATGGCAGAGGTTGCAG
EST: gi|88980703|gb|CI022414.1|CI022414
EST:     GGTGGGGGGCGGCGAGCTATCCTAGCGCCCGCCTTGGGAGCGCTCTCGCG                         GATCTCCTTTGGAGCTTTGATAGCATAGCAAGGTCATGGCAGAGGTTGCAG
genomic: GGTGGGGGGCGGCGAGCTATCCTAGCGCCCGCCTTGGGAGCGCTCTCGCGgtacgtgtct ... aatcacccagGATCTCCTTTGGAGCTTTGATAGCATAGCAAGGTCATGGCAGAGGTTGCAG
EST: gi|88572905|gb|CI664476.1|CI664476
EST:     GGTGGGGGGCGGCGAGCTATCCTAGCGCCCGCCTTGGGAGCGCTCTCGCG                         GATCTCCTTTGGAGCTTTGATAGCATAGCAAGGTCATGGCAGAGGTTGCAG
genomic: GGTGGGGGGCGGCGAGCTATCCTAGCGCCCGCCTTGGGAGCGCTCTCGCGgtacgtgtct ... aatcacccagGATCTCCTTTGGAGCTTTGATAGCATAGCAAGGTCATGGCAGAGGTTGCAG