1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTCGGTCGACAGCACAGTAAATTCCGCCGGCGCGTGGTGCAGCTTTGCCGGCAGCGTGCCGCTCCCACGGCCATTTACTTCGCCTCCTCTCCTGAGGCAGgtcggtgtcggtatttatgtatacttgcacagttccacttcccggccagtctcctcactctcgactactcttctttggtttttgctgtgaag
species | Oryza sativa |
transcript | LOC_Os05g37470.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCAGCGTGCCGCTCCCACGGCCATTTACTTCGCCTCCTCTCCTGAGGCAG GCGCGCGGCTGGAGACGGGEST: gi|58657145|gb|CK045825.1|CK045825
genomic: GCAGCGTGCCGCTCCCACGGCCATTTACTTCGCCTCCTCTCCTGAGGCAGgtcggtgtcg ... tgctgtgaagGCGCGCGGCTGGAGACGGG
EST: GCAGCGTGCCGCTCCCACGGCCATTTACTTCGCCTCCTCTCCTGAGGCAG GCGCGCGGCTGGAGACGGGAAGACCGGGGAGGACAGGAGGATGGTGCCGGCEST: gi|117242428|gb|CT843000.1|CT843000
genomic: GCAGCGTGCCGCTCCCACGGCCATTTACTTCGCCTCCTCTCCTGAGGCAGgtcggtgtcg ... tgctgtgaagGCGCGCGGCTGGAGACGGGAAGACCGGGGAGGACAGGAGGATGGTGCCGGC
EST: GCAGCGTGCCGCTCCCACGGCCATTTACTTCGCCTCCTCTCCTGAGGCAG GCGCGCGGCTGGAGACGGGAAGACCGGGGAGGACAGGAGGATGGTGCCGGCEST: gi|88300218|gb|CI582452.1|CI582452
genomic: GCAGCGTGCCGCTCCCACGGCCATTTACTTCGCCTCCTCTCCTGAGGCAGgtcggtgtcg ... tgctgtgaagGCGCGCGGCTGGAGACGGGAAGACCGGGGAGGACAGGAGGATGGTGCCGGC
EST: GCAGCGTGCCGCTCCCACGGCCATTTACTTCGCCTCCTCTCCTGAGGCAG GCGCGCGGCTGGAGACGGGAAGAEST: gi|58659763|gb|CK048443.1|CK048443
genomic: GCAGCGTGCCGCTCCCACGGCCATTTACTTCGCCTCCTCTCCTGAGGCAGgtcggtgtcg ... tgctgtgaagGCGCGCGGCTGGAGACGGGAAGA
EST: GCAGCGTGCCGCTCCCACGGCCATTTACTTCGCCTCCTCTCCTGAGGCAG GCGCGCGGCTGGAGACGGGAAGACCGGGGAGGACAGGAGGA
genomic: GCAGCGTGCCGCTCCCACGGCCATTTACTTCGCCTCCTCTCCTGAGGCAGgtcggtgtcg ... tgctgtgaagGCGCGCGGCTGGAGACGGGAAGACCGGGGAGGACAGGAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCGGTCGACAGCACAGTAAATTCCGCCGGCGCGTGGTGCAGCTTTGCCGGCAGCGTGCCGCTCCCACGGCCATTTACTTCGCCTCCTCTCCTGAGGCAGgtcggtgtcggtatttatgtatacttgcacagttccacttcccggccagtctcctcactctcgactactcttctttggtttttgctgtgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC