1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGCACCCTCAACGGCTTCGACGACGACGCGCTCCGCCGCCTCCAACACCCCGAAGGGTGGCCTGAGCTCACCTCCTCCTTCGTTGACCTCGAGATCCCAGgttttattacctcttttccttcctcctcctgcgtcagcgtggtttctcttagctggtagtaccgtagtgaaatgtaacccgacaacccatgaattgggtttgtgcag
species | Oryza sativa |
transcript | LOC_Os05g37120.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGAAGGGTGGCCTGAGCTCACCTCCTCCTTCGTTGACCTCGAGATCCCAG TGGATGGCTCGGAGGGTGCAGGAGACGGTGTGCAGGCGCGCCCTGTGTATGEST: gi|33677673|gb|CF305912.1|CF305912
genomic: CGAAGGGTGGCCTGAGCTCACCTCCTCCTTCGTTGACCTCGAGATCCCAGgttttattac ... gtttgtgcagTGGATGGCTCGGAGGGTGCAGGAGACGGTGTGCAGGCGCGCCCTGTGTATG
EST: CGAAGGGTGGCCTGAGCTCACCTCCTCCTTCGTTGACCTCGAGATCCCAG TGGATGGCTCGGAGGGTGCAGGAGACGGTGTGC-TGCTCGTTCTGTGTATG
genomic: CGAAGGGTGGCCTGAGCTCACCTCCTCCTTCGTTGACCTCGAGATCCCAGgttttattac ... gtttgtgcagTGGATGGCTCGGAGGGTGCAGGAGACGGTGTGCAGGCGCGCCCTGTGTATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCACCCTCAACGGCTTCGACGACGACGCGCTCCGCCGCCTCCAACACCCCGAAGGGTGGCCTGAGCTCACCTCCTCCTTCGTTGACCTCGAGATCCCAGgttttattacctcttttccttcctcctcctgcgtcagcgtggtttctcttagctggtagtaccgtagtgaaatgtaacccgacaacccatgaattgggtttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC