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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCGCCCGTGCCCCTCGGCCAGGCGCCGGAGGCGGTGGACCCCGAGGACCCGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAGgtctagatcggtcttacccttccttctgccctcttaccccttccttcctcccggacggattaaagtattaaaccctaatggttgcttggatctggccgcc...

Basic information

species Oryza sativa
transcript LOC_Os05g36110.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g36110.4 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G048150_T03 (Zea mays), 5'ss of exon 1
---CGCGCCCGTGCCCCTCGGCCAGGCGCCGGAGGCGGTGGACCCCGAGGACCCGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAGgtctagatcggtcttacccttccttctgccctcttaccccttccttcctcccggacggattaaagtattaaaccctaatggtt--gcttggatctggccgcc----------
   ||||||| |||| |||||||||||| ||   |||   |||||||||||||| ||||||||||||||||| |||| |||||| || |  ||||| |||||||||   ||| ||||  ||||     ||        |||||  ||| |  |  | |||| |     ||  | |||||| | | |  |||||||||||| |||           
GTACGCGCCCCTGCCACTCGGCCAGGCGGCG---GCGCCTGACCCCGAGGACCCCGTCAAGTCGCCGCCGCGACCCAGCTCGCCTGCCACGTCCACTCGCAAGgtccgaatccgtctcgccctagaccct--------accccaccctgcagcttgtacggttc----taccataccctagtcgcttcgcttggatctggtcgcggtcgcccctg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29657648|gb|CB653923.1|CB653923
EST:     CGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAG                         GCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGA
genomic: CGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAGgtctagatcg ... gattaaacagGCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGA
EST: gi|13896941|gb|AU183277.1|AU183277
EST:     CGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAG                         GCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGA
genomic: CGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAGgtctagatcg ... gattaaacagGCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGA
EST: gi|88740560|gb|CI764068.1|CI764068
EST:     CGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAG                         GCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGA
genomic: CGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAGgtctagatcg ... gattaaacagGCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGA
EST: gi|1631723|gb|C19452.1|C19452
EST:     CGGTCAAGTCGCCGCCG-GGCCCACCTCGCCGGCGAACTCCACCCGCAA-                         GCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGA
genomic: CGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAGgtctagatcg ... gattaaacagGCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGA
EST: gi|88732124|gb|CI757301.1|CI757301
EST:     CGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAG                         GCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGA
genomic: CGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAGgtctagatcg ... gattaaacagGCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGA
EST: gi|88739463|gb|CI762971.1|CI762971
EST:     CGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAG                         GCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGA
genomic: CGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAGgtctagatcg ... gattaaacagGCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGA
EST: gi|29621889|gb|CB626900.1|CB626900
EST:     CGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAG                         GCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGA
genomic: CGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAGgtctagatcg ... gattaaacagGCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGA
EST: gi|88759825|gb|CI769381.1|CI769381
EST:     CGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAG                         GCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGA
genomic: CGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAGgtctagatcg ... gattaaacagGCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGA
EST: gi|88739598|gb|CI763106.1|CI763106
EST:     CGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAG                         GCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGA
genomic: CGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAGgtctagatcg ... gattaaacagGCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGA
EST: gi|58695852|gb|CK084539.1|CK084539
EST:     CGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAG                         GCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGA
genomic: CGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAGgtctagatcg ... gattaaacagGCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGA
EST: gi|88357088|gb|CI615975.1|CI615975
EST:     CGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAG                         GCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGA
genomic: CGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAGgtctagatcg ... gattaaacagGCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGA
EST: gi|88343606|gb|CI622981.1|CI622981
EST:     CGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAG                         GCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGA
genomic: CGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAGgtctagatcg ... gattaaacagGCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGA
EST: gi|29621929|gb|CB626940.1|CB626940
EST:     CGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAG                         GCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGA
genomic: CGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAGgtctagatcg ... gattaaacagGCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGA
EST: gi|88745549|gb|CI768909.1|CI768909
EST:     CGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAG                         GCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGA
genomic: CGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAGgtctagatcg ... gattaaacagGCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGA
EST: gi|88762333|gb|CI771889.1|CI771889
EST:     CGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAG                         GCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGA
genomic: CGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAGgtctagatcg ... gattaaacagGCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGA
EST: gi|87012610|gb|CI307358.1|CI307358
EST:     CGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAG                         GCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGA
genomic: CGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAGgtctagatcg ... gattaaacagGCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGA
EST: gi|88413003|gb|CI578854.1|CI578854
EST:     GGTCAAGTCGCCGCCGCGGCCCACCTCGCCCGGCGAACTCCACCCGCAAG                         GCATGTTTTGCTGTTCTTCAAAAGCTGGGTGTCAAGAAAATTTATGACAGG
genomic: GGTCAAGTCGCCGCCGCGGCCCACCTCGCC-GGCGAACTCCACCCGCAAGgtctagatcg ... gattaaacagGCATGTTTTGCTGTTCTTCAAA-GCTGGGTGTCAAGAAAATTTATGACAGG
EST: gi|88732046|gb|CI757223.1|CI757223
EST:     CGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAG                         GCATGTNTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGA
genomic: CGGTCAAGTCGCCGCCGCGGCCCACCTCGCCGGCGAACTCCACCCGCAAGgtctagatcg ... gattaaacagGCATGTTTTGCTGTTCTTCAAAGCTGGGTGTCAAGAAAATTTATGACAGGA