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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCTCGCCTCGCCTCGCCCTCCTGCAGCACGCGCGGCTGGCTGCCCGACCCAGATCCGGAGCGCCATGTCGAGGAATCCGGGCTGCACCGTCTTCATAGgtgagatgagatctccccttcccttcccgcctacgggtcctagctctcgctggttcatccggggctttccccccccaattcccccaattctctgtggctg...

Basic information

species Oryza sativa
transcript LOC_Os05g35274.5
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g35274.5 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G175676_T01 (Zea mays), 5'ss of exon 1
----AACCTCGCCTCGCCTCGCCCTCCTGCAGCACGCGCGGCTGGCTGCCCGACCCAGATCCGGAGCGCCATGTCGAGGAATCCGGGCTGCACCGTCTTCATAGgtgagatgagatctccccttcccttcccgcctacgggtcctagctctcgctggttcatccggggctttccccccccaattccccca-attctctgtggctg
      |   || ||  |  | | |||| |  | ||  |     || |||   ||||||||||| | |||||| | ||||| |||||||||||||||||||||||||||||     |||| |  | |   |  ||| |  |    |   ||||  |    |  ||  |      |||    |  ||| |  |   || ||  || 
ATTCGCCGCTGCGTCAACGTGTCTTCCTTCC-CGCGGTCTCTCCGCCGCCT--CCCAGATCCGGCG-GCCATGGCAAGGAACCCGGGCTGCACCGTCTTCATAGgtgagatctcgcctcctccccgcgcgctcccttcttgcttgactgctcgaggtccgagtcgccgggacggcccggtgacccccgcggaggttcagtacct-