1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTTTAGTTTATCTGAAGGAGAGGGATTTGTAAGTGCAAGGAACTAAAGCGGCATCTATAACAGATGGAGGATTTGGCAAAGTTCTTGTTTGGAGTTTCTGgtgagtgttactcagtactctagcttgattatattggttcctgtgaattttgttaggttataagaagtatttggtgagtgttcttgttggctttcttcagcttactggttggttttgttctttcag
species | Oryza sativa |
transcript | LOC_Os05g35140.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCATCTATAACAGATGGAGGATTTGACAAAGTTCTTGTTTGGAGTTTCTG GCAATGTCATCGCGCTCTTCCTCTTCTTATCCCCAGTEST: gi|88336144|gb|CI647338.1|CI647338
genomic: GCATCTATAACAGATGGAGGATTTGGCAAAGTTCTTGTTTGGAGTTTCTGgtgagtgtta ... gttctttcagGCAATGTCATCGCGCTCTTCCTCTTCTTATCCCCAGT
EST: GCATCTATAACAGATGGAGGATTTGGCAAAGTTCTTGTTTGGAGTTTCTG GCAATGTCATCGCGCTCTTCCTCTTCTTATCCCCAGTEST: gi|88348551|gb|CI634146.1|CI634146
genomic: GCATCTATAACAGATGGAGGATTTGGCAAAGTTCTTGTTTGGAGTTTCTGgtgagtgtta ... gttctttcagGCAATGTCATCGCGCTCTTCCTCTTCTTATCCCCAGT
EST: GCATCTATAACAGATGGAGGATTTGGCAAAGTTCTTGTTTGGAGTTTCTG GCAATGTCATCGCGCTCTTCCTCTTCTTATCCCCAGTEST: gi|38473069|gb|CF957201.1|CF957201
genomic: GCATCTATAACAGATGGAGGATTTGGCAAAGTTCTTGTTTGGAGTTTCTGgtgagtgtta ... gttctttcagGCAATGTCATCGCGCTCTTCCTCTTCTTATCCCCAGT
EST: CATCTATAACAGAATGGAGGATTTGGCGAAGTTCTTGTTTGGAGTTTCTG GGCAATGTCATCGCGCTCTEST: gi|88575402|gb|CI669547.1|CI669547
genomic: CATCTATAACAGA-TGGAGGATTTGGCAAAGTTCTTGTTTGGAGTTTCTGgtgagtgtta ... gttctttcagG-CAATGTCATCGCGCTCT
EST: GCATCTATAACAGATGGAGGATTTGGCAAAGTTCTTGTTTGGAGTTTCTG GCAATGTCATCGCGCTCTTCCTCTTCTTATCCCCACTEST: gi|88573529|gb|CI665100.1|CI665100
genomic: GCATCTATAACAGATGGAGGATTTGGCAAAGTTCTTGTTTGGAGTTTCTGgtgagtgtta ... gttctttcagGCAATGTCATCGCGCTCTTCCTCTTCTTATCCCCAGT
EST: GCATCTATAACAGATGGAGGATTTGGCAAAGTTCTTGTTTGGAGTTTCTG GCAATGTCATCGCGCTCTTCCTCTTCTTATCCCCAGTEST: gi|33799249|gb|CF325482.1|CF325482
genomic: GCATCTATAACAGATGGAGGATTTGGCAAAGTTCTTGTTTGGAGTTTCTGgtgagtgtta ... gttctttcagGCAATGTCATCGCGCTCTTCCTCTTCTTATCCCCAGT
EST: GCATCTATAACAGATGGAGGATTTGGCAAAGTTCTTGTTTGGAGTTTCTG GCAATGTCATCGCGCTCTTCCTCTTCTTATCCCCAGTEST: gi|29662554|gb|CB658829.1|CB658829
genomic: GCATCTATAACAGATGGAGGATTTGGCAAAGTTCTTGTTTGGAGTTTCTGgtgagtgtta ... gttctttcagGCAATGTCATCGCGCTCTTCCTCTTCTTATCCCCAGT
EST: GCATCTATAACAGATGGAGGATTTGGCAAAGTTCTTGTTTGGAGTTTCTG GCAATGTCATCGCGCTCTTCCTCTTCTTATCCCCAGTEST: gi|88341534|gb|CI641286.1|CI641286
genomic: GCATCTATAACAGATGGAGGATTTGGCAAAGTTCTTGTTTGGAGTTTCTGgtgagtgtta ... gttctttcagGCAATGTCATCGCGCTCTTCCTCTTCTTATCCCCAGT
EST: GCATCTATAACAGATGGAGGATTTGGCAAAGTTCTTGTTTGGAGTTTCTG GCAATGTCATCGCGCTCTTCCTCTTCTTATCCCCAGTEST: gi|699864|gb|D46155.1|D46155
genomic: GCATCTATAACAGATGGAGGATTTGGCAAAGTTCTTGTTTGGAGTTTCTGgtgagtgtta ... gttctttcagGCAATGTCATCGCGCTCTTCCTCTTCTTATCCCCAGT
EST: GCATCTATAACAGATGGAGGATTTGGCAAAGTTCTTGTTTGGAGTTTCTG GCAATGTCATCGCGCTCTTCCTCTTCTTATCCCCAGTGCCTACTTTEST: gi|29629891|gb|CB634900.1|CB634900
genomic: GCATCTATAACAGATGGAGGATTTGGCAAAGTTCTTGTTTGGAGTTTCTGgtgagtgtta ... gttctttcagGCAATGTCATCGCGCTCTTCCTCTTCTTATCCCCAGTGCCTACTTT
EST: GCATCTATAACAGATGGAGGATTTGGCGAAGTTCTTGTTTGGAGTTTCTG GCAATGTCATCGCGCTCTTCCTCTTCTTATCCCCAGTEST: gi|88335261|gb|CI650226.1|CI650226
genomic: GCATCTATAACAGATGGAGGATTTGGCAAAGTTCTTGTTTGGAGTTTCTGgtgagtgtta ... gttctttcagGCAATGTCATCGCGCTCTTCCTCTTCTTATCCCCAGT
EST: GCATCTATAACAGATGGAGGATTTGGCAAAGTTCTTGTTTGGAGTTTCTG GCAATGTCATCGCGCTCTTCCTCTTCTTATCCCCAGTEST: gi|88338434|gb|CI645688.1|CI645688
genomic: GCATCTATAACAGATGGAGGATTTGGCAAAGTTCTTGTTTGGAGTTTCTGgtgagtgtta ... gttctttcagGCAATGTCATCGCGCTCTTCCTCTTCTTATCCCCAGT
EST: GCATCTATAACAGATGGAGGATTTGGCAAAGTTCTTGTNTGGAGTTTCTG GCAATGTCATCGCGCTCTTCCTCTTCTTATCCCCAGTEST: gi|86902517|gb|CI304336.1|CI304336
genomic: GCATCTATAACAGATGGAGGATTTGGCAAAGTTCTTGTTTGGAGTTTCTGgtgagtgtta ... gttctttcagGCAATGTCATCGCGCTCTTCCTCTTCTTATCCCCAGT
EST: GCATCTATAACAGATGGAGGATTTGGCAAAGTTCTTGTTTGGAGTTTCTG GCAATGTCATCGCGCTCTTCCTCTTCTTATCCCCAGTEST: gi|29657893|gb|CB654168.1|CB654168
genomic: GCATCTATAACAGATGGAGGATTTGGCAAAGTTCTTGTTTGGAGTTTCTGgtgagtgtta ... gttctttcagGCAATGTCATCGCGCTCTTCCTCTTCTTATCCCCAGT
EST: GCATCTATAACAGATGGAGGATTTGGCAAAGTTCTTGTTTGGAGTTTCTG GCAATGTCATCGCGCTCTTCCTCTTCTTATCCCCAGT
genomic: GCATCTATAACAGATGGAGGATTTGGCAAAGTTCTTGTTTGGAGTTTCTGgtgagtgtta ... gttctttcagGCAATGTCATCGCGCTCTTCCTCTTCTTATCCCCAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTAGTTTATCTGAAGGAGAGGGATTTGTAAGTGCAAGGAACTAAAGCGGCATCTATAACAGATGGAGGATTTGGCAAAGTTCTTGTTTGGAGTTTCTGgtgagtgttactcagtactctagcttgattatattggttcctgtgaattttgttaggttataagaagtatttggtgagtgttcttgttggctttcttcagcttactggttggttttgttctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG