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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATGACACGCTCGAGCGGATCAATGCGGCGTGGCCGGGACACGCCGTCCTCGTGCCCCCCGCGCCCGACGCCCAGGTCGCCCACAAGTTCGGATCCCAGgtgagaggactggtttccggggggtgcgcgccccccagatgctcgatgaaatgccagcgcgagtgactcttgcctttctgcttgtgattgtgcag

Basic information

species Oryza sativa
transcript LOC_Os05g32120.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g32120.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G085042_T01 (Zea mays), 5'ss of exon 1
CTATGACACGCTCGAGCGGATCAATGCGGCGTGGCCGGGACACGCCGTCCTCGTGCCCCCCGCGCCCGACGCCCAGGTCGCCCACAAGTTCGGATCCCAGgtgagaggactggtttccggggggtgcgcgccccccagatgctcgatgaaatgccagcgcgagtgactcttgcc----tttctgcttgtgattgtgcag
||| || || ||||| || |||||||| || ||||| |||||||||||||||||||||||||||||||| ||||||  ||||||||| |||||||| ||||| ||              | ||   |   | | | |  || |||||||||||    |  |  | ||    ||     |||| |  ||||| |      
CTACGAGACCCTCGACCGCATCAATGCCGCCTGGCCAGGACACGCCGTCCTCGTGCCCCCCGCGCCCGATGCCCAGACCGCCCACAAATTCGGATCTCAGgtaag--------------gaggaaaccaccgctcaaactgttcgatgaaatgtatccatgcctaaccgcggctatcgtttccgtctgtgactacag--