1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTGTGTATATATATACAGGCATACATACCGTTCTTGCCGCCTCTAGTTTGGGTGTGATTGAATGACAAAGGAGATGGCCGATGATGTCGAGTACCATGAGgtgaggcacctgattctgttcatctcttcttccccccgtttctctgaccagatttcctgtatattactatgcatgtgcatgcttgcttgcttgcttgctt...
species | Oryza sativa |
transcript | LOC_Os05g29974.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGTGTGATTGAATGACAAAGGAGATGGCCGATGATGTCGAGTACCATGAG GAGTTTGTGACGAATCCGAGGGGGTTGCGGCTCTTCACATGCGGCTGGCTTEST: gi|58665334|gb|CK054020.1|CK054020
genomic: GGTGTGATTGAATGACAAAGGAGATGGCCGATGATGTCGAGTACCATGAGgtgaggcacc ... atatattcagGAGTTTGTGACGAATCCGAGGGGGTTGCGGCTCTTCACATGCGGCTGGCTT
EST: GGTGTGATTGAATGACAAAGGAGATGGCCGATGATGTCGAGTACCATGAG GAGTTTGTGACGAATCCGAGGGGGTTGCGGCTCTTCACATGCGGCTGGCTTEST: gi|88356078|gb|CI627526.1|CI627526
genomic: GGTGTGATTGAATGACAAAGGAGATGGCCGATGATGTCGAGTACCATGAGgtgaggcacc ... atatattcagGAGTTTGTGACGAATCCGAGGGGGTTGCGGCTCTTCACATGCGGCTGGCTT
EST: GGTGTGATTGAATGACAAAGGAGATGGCCGATGATGTCGAGTACCATGAG GAGTTTGTGACGAATCCGAGGGGGTTGCGGCTCTTCACATGCGGCTGGCTTEST: gi|88368238|gb|CI575120.1|CI575120
genomic: GGTGTGATTGAATGACAAAGGAGATGGCCGATGATGTCGAGTACCATGAGgtgaggcacc ... atatattcagGAGTTTGTGACGAATCCGAGGGGGTTGCGGCTCTTCACATGCGGCTGGCTT
EST: GGTGTGATTGAATGACAAAGGAGATGGCCGATGATGTCGAGTACCATGAG GAGTTTGTGACGAATCCGAGGGGGTTGCGGCTCTTCACATGCGGCTGGCTTEST: gi|88760430|gb|CI769986.1|CI769986
genomic: GGTGTGATTGAATGACAAAGGAGATGGCCGATGATGTCGAGTACCATGAGgtgaggcacc ... atatattcagGAGTTTGTGACGAATCCGAGGGGGTTGCGGCTCTTCACATGCGGCTGGCTT
EST: GGTGTGATTGAATGACAAAGGAGATGGCCGATGATGTCGAGTACCATGAG GAGTTTGTGACGAATCCGAGGGGGTTGCGGCTCTTCACATGCGGCTGGCTTEST: gi|29656345|gb|CB652620.1|CB652620
genomic: GGTGTGATTGAATGACAAAGGAGATGGCCGATGATGTCGAGTACCATGAGgtgaggcacc ... atatattcagGAGTTTGTGACGAATCCGAGGGGGTTGCGGCTCTTCACATGCGGCTGGCTT
EST: GGTGTGATTGAATGACAAAGGAGATGGCCGATGATGTCGAGTACCATGAG GAGTTTGTGACGAATCCGAGGGGGTTGCGGCTCTTCACATGCGGCTGGCTTEST: gi|88743266|gb|CI766774.1|CI766774
genomic: GGTGTGATTGAATGACAAAGGAGATGGCCGATGATGTCGAGTACCATGAGgtgaggcacc ... atatattcagGAGTTTGTGACGAATCCGAGGGGGTTGCGGCTCTTCACATGCGGCTGGCTT
EST: GGTGTGATTGAATGACAAAGGAGATGGCCGATGATGTCGAGTACCATGAG GAGTTTGTGACGAATCCGAGGGGGTTGCGGCTCTTCACATGCGGCTGGCTT
genomic: GGTGTGATTGAATGACAAAGGAGATGGCCGATGATGTCGAGTACCATGAGgtgaggcacc ... atatattcagGAGTTTGTGACGAATCCGAGGGGGTTGCGGCTCTTCACATGCGGCTGGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTGTATATATATACAGGCATACATACCGTTCTTGCCGCCTCTAGTTTGGGTGTGATTGAATGACAAAGGAGATGGCCGATGATGTCGAGTACCATGAGgtgaggcacctgattctgttcatctcttcttccccccgtttctctgaccagatttcctgtatattactatgcatgtgcatgcttgcttgcttgcttgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcccccc