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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGAGGTTGCTCCATGGGAGAAGGAGGTCATAAATGATCCCTGTACTCCAAAACCTGACCCCAATCCGTTCACCTATGTGCCTGAACCAAAATCAGAGgtagcctagttcatttttttttcagtatttcgattcttcctctctgttttgtccttctgatttctgccattgattatgatttcag

Basic information

species Oryza sativa
transcript LOC_Os05g28180.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g28180.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G416667_T03 (Zea mays), 5'ss of exon 5
AGAAGAGGTTGCTCCATGGGAGAAGGAGGTCATAAATGATCCCTGTACTCCAAAACCTGACCCCAATCCGTTCACCTATGTGCCTGAACCAAAATCAGAGgtagcctagttcatttttttttcagtatttcgattcttcctctctgttttgtccttctgatttctgccattgattatgatttcag
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AGAGGAGGTTGCTCCATGGGAGAAGGAGGTCATAAATGACCCCTGTACTCCAAAACCTAACCCCAACCCGTTCACTTATGTGCCTGAACCAAAGTCAGAGgtaccttagtt-gtgcttgttgcaatcttatgata--tcctgttttttttgtccttgagattccatc---taattgtggtttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29675537|gb|CB671812.1|CB671812
EST:     CAAAACCTGACCCCAATCCGTTCACCTATGTGCCTGAACCAAAATCAGAG                         CATGTTTTCCAAATGGTCGATGGTGTTGTCCATGTCTATGCAGATAAAGAC
genomic: CAAAACCTGACCCCAATCCGTTCACCTATGTGCCTGAACCAAAATCAGAGgtagcctagt ... atgatttcagCATGTTTTCCAAATGGTCGATGGTGTTGTCCATGTCTATGCAGATAAAGAC