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GCCGCTCGCCGCCATGGATGAGGAGTACGACGTGATCGTGCTGGGGACGGGCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAGgtacctctctcctacccaatccatccgccgcctcccgtgctcggatcggtgctccccatcgtcgtcgatccgtagatcgccccccacttcatctcatctg...
species | Oryza sativa |
transcript | LOC_Os05g23860.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAG GTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTCEST: gi|88765626|gb|CI774720.1|CI774720
genomic: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAGgtacctctct ... gtttttgcagGTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTC
EST: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAG GTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTCEST: gi|2310891|gb|C27046.1|C27046
genomic: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAGgtacctctct ... gtttttgcagGTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTC
EST: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAG GTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTCEST: gi|88399430|gb|CI606051.1|CI606051
genomic: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAGgtacctctct ... gtttttgcagGTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTC
EST: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGAAGGCCTCAAG GTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTCEST: gi|88315062|gb|CI610121.1|CI610121
genomic: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAGgtacctctct ... gtttttgcagGTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTC
EST: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAG GTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTCEST: gi|88400779|gb|CI616784.1|CI616784
genomic: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAGgtacctctct ... gtttttgcagGTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTC
EST: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAG GTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTCEST: gi|58679926|gb|CK068613.1|CK068613
genomic: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAGgtacctctct ... gtttttgcagGTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTC
EST: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAG GTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTCEST: gi|33655822|gb|CF278436.1|CF278436
genomic: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAGgtacctctct ... gtttttgcagGTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTC
EST: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAG GTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTCEST: gi|88425765|gb|CI571665.1|CI571665
genomic: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAGgtacctctct ... gtttttgcagGTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTC
EST: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAG GTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTCEST: gi|58600989|gb|CK011517.1|CK011517
genomic: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAGgtacctctct ... gtttttgcagGTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTC
EST: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAG GTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTGEST: gi|88421949|gb|CI611569.1|CI611569
genomic: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAGgtacctctct ... gtttttgcagGTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTC
EST: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAG GTCTTGCAAATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTCEST: gi|88411859|gb|CI571351.1|CI571351
genomic: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAGgtacctctct ... gtttttgcagGTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTC
EST: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAG GTATTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTCEST: gi|88735490|gb|CI758998.1|CI758998
genomic: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAGgtacctctct ... gtttttgcagGTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTC
EST: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAG GTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTCEST: gi|58607180|gb|CK035213.1|CK035213
genomic: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAGgtacctctct ... gtttttgcagGTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTC
EST: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGAGGGCCTCAAG GTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTCEST: gi|88392817|gb|CI624048.1|CI624048
genomic: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAGgtacctctct ... gtttttgcagGTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTC
EST: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAG GTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTCEST: gi|58673621|gb|CK062307.1|CK062307
genomic: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAGgtacctctct ... gtttttgcagGTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTC
EST: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAG GTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTCEST: gi|33655650|gb|CF278264.1|CF278264
genomic: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAGgtacctctct ... gtttttgcagGTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTC
EST: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAG GTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTCEST: gi|88433375|gb|CI591815.1|CI591815
genomic: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAGgtacctctct ... gtttttgcagGTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTC
EST: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAG GTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTCEST: gi|88733282|gb|CI756459.1|CI756459
genomic: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAGgtacctctct ... gtttttgcagGTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTC
EST: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAG GTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTCEST: gi|88726752|gb|CI750407.1|CI750407
genomic: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAGgtacctctct ... gtttttgcagGTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTC
EST: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAG GTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTCEST: gi|58668576|gb|CK057262.1|CK057262
genomic: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAGgtacctctct ... gtttttgcagGTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTC
EST: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAG GTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTCEST: gi|58687035|gb|CK075722.1|CK075722
genomic: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAGgtacctctct ... gtttttgcagGTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTC
EST: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAG GTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTC
genomic: GCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAGgtacctctct ... gtttttgcagGTCTTGCACATGGATAGGAATGACTACTATGGAGGAGATTCCACCTCGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCGCTCGCCGCCATGGATGAGGAGTACGACGTGATCGTGCTGGGGACGGGCCTCAAGGAGTGCATCCTCAGCGGCCTCCTCTCCGTCGACGGCCTCAAGgtacctctctcctacccaatccatccgccgcctcccgtgctcggatcggtgctccccatcgtcgtcgatccgtagatcgccccccacttcatctcatctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtcgtcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccccac