1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CGCCGCCGCCATCGCCGCCGCTTCACTGCTCCCCTCCTCCGCCTTCGCTCTCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAGgtaaccccggttgaaactcaacgaaattcgtcaccgggatcctttccccccccccccccccctcaccggattcttgagtttctcgcgcttgtttcgctcaccatgtcttggttggggttctctgatctctctccctcttctgtag
species | Oryza sativa |
transcript | LOC_Os05g22970.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAG AGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCGEST: gi|88343329|gb|CI627289.1|CI627289
genomic: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAGgtaaccccgg ... tcttctgtagAGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCG
EST: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGTTCAAG AGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCGEST: gi|33819107|gb|CF335378.1|CF335378
genomic: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAGgtaaccccgg ... tcttctgtagAGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCG
EST: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAG AGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCGEST: gi|88364009|gb|CI610353.1|CI610353
genomic: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAGgtaaccccgg ... tcttctgtagAGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCG
EST: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAG AGATTCGACCGGGCTCGCCGGTTCGCGCCGGGCGACGCCATGTCGACGTCGEST: gi|88396511|gb|CI600994.1|CI600994
genomic: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAGgtaaccccgg ... tcttctgtagAGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCG
EST: TCCGCCGTCTCTCTTCGGCGGCGAACGTCTCCCGTTTTGCCCAGTTCAAG AGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACTTCGEST: gi|38478143|gb|CF962276.1|CF962276
genomic: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAGgtaaccccgg ... tcttctgtagAGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCG
EST: GCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTG-CCAGCTCAAG AGATTCGA-CGGGGTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCGEST: gi|66918847|gb|CX105695.1|CX105695
genomic: GCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAGgtaaccccgg ... tcttctgtagAGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCG
EST: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGGCCAGCTCAAG AGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCGEST: gi|38482501|gb|CF966535.1|CF966535
genomic: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAGgtaaccccgg ... tcttctgtagAGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCG
EST: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAG AGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCGEST: gi|87021271|gb|CI295330.1|CI295330
genomic: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAGgtaaccccgg ... tcttctgtagAGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCG
EST: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAG AGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCGEST: gi|88329315|gb|CI653229.1|CI653229
genomic: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAGgtaaccccgg ... tcttctgtagAGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCG
EST: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAG AGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCGEST: gi|25800681|gb|CA756642.1|CA756642
genomic: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAGgtaaccccgg ... tcttctgtagAGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCG
EST: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAG AGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCGEST: gi|33813839|gb|CF332805.1|CF332805
genomic: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAGgtaaccccgg ... tcttctgtagAGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCG
EST: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAG AGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCGEST: gi|88364025|gb|CI610369.1|CI610369
genomic: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAGgtaaccccgg ... tcttctgtagAGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCG
EST: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAG AGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGGCGCCATGTCGACGTCGEST: gi|58687672|gb|CK076359.1|CK076359
genomic: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAGgtaaccccgg ... tcttctgtagAGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCG
EST: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAG AGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCGEST: gi|33815680|gb|CF333691.1|CF333691
genomic: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAGgtaaccccgg ... tcttctgtagAGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCG
EST: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAG AGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCC-TGNTCGACGTCEST: gi|88314674|gb|CI606742.1|CI606742
genomic: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAGgtaaccccgg ... tcttctgtagAGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATG-TCGACGTC
EST: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAG AGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCGEST: gi|88725675|gb|CI748934.1|CI748934
genomic: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAGgtaaccccgg ... tcttctgtagAGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCG
EST: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAG AGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCGEST: gi|88575843|gb|CI669988.1|CI669988
genomic: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAGgtaaccccgg ... tcttctgtagAGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCG
EST: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAG AGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCGEST: gi|58588133|gb|CF986441.1|CF986441
genomic: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAGgtaaccccgg ... tcttctgtagAGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCG
EST: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGGTCAAG AGATTCGACCGGGCTCGCCGTGTTCGCGCCGGCCGCCGCCATGTCGACGTCEST: gi|88401847|gb|CI591174.1|CI591174
genomic: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAGgtaaccccgg ... tcttctgtagAGATTCGACCGGGCTCGCCG-GTTCGCGCCGGCCGCCGCCATGTCGACGTC
EST: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAG AGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCGEST: gi|88331273|gb|CI639684.1|CI639684
genomic: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAGgtaaccccgg ... tcttctgtagAGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCG
EST: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAG AGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCGEST: gi|58692806|gb|CK081493.1|CK081493
genomic: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAGgtaaccccgg ... tcttctgtagAGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCG
EST: CTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAG AGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCGEST: gi|88330299|gb|CI658610.1|CI658610
genomic: CTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAGgtaaccccgg ... tcttctgtagAGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCG
EST: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAG AGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCGEST: gi|9457296|gb|AU063064.2|AU063064
genomic: TCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAGgtaaccccgg ... tcttctgtagAGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCG
EST: CGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAG AGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCG
genomic: CGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAGgtaaccccgg ... tcttctgtagAGATTCGACCGGGCTCGCCGGTTCGCGCCGGCCGCCGCCATGTCGACGTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCCGCCGCCATCGCCGCCGCTTCACTGCTCCCCTCCTCCGCCTTCGCTCTCCGCCGTCTCTCCTCGGCGGCGAACGTCTCCCGCTTTGCCCAGCTCAAGgtaaccccggttgaaactcaacgaaattcgtcaccgggatcctttccccccccccccccccctcaccggattcttgagtttctcgcgcttgtttcgctcaccatgtcttggttggggttctctgatctctctccctcttctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA