1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATCCTCCCTCTCTTTCGCTCGTAGCCATCGCTCTCTTCCACTGGTTCGCTCTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTGgtaagggctaggttgggcatctccctcccctttctcacctccttcagtttcttctcctctcttcctttgatttgatttgatttcataaatatgctagatc...
species | Oryza sativa |
transcript | LOC_Os05g13440.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTG ATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGGEST: gi|88727931|gb|CI749443.1|CI749443
genomic: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTGgtaagggcta ... ttatgaacagATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGG
EST: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTG ATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGGEST: gi|218480637|gb|FG944945.1|FG944945
genomic: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTGgtaagggcta ... ttatgaacagATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGG
EST: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTG ATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCNGGGCGAGCGACTTGTEST: gi|88436600|gb|CI691330.1|CI691330
genomic: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTGgtaagggcta ... ttatgaacagATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGC-GGGCGAGCGACTTG-
EST: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTG ATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGGEST: gi|88570263|gb|CI661438.1|CI661438
genomic: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTGgtaagggcta ... ttatgaacagATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGG
EST: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTG ATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGGEST: gi|58663146|gb|CK051832.1|CK051832
genomic: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTGgtaagggcta ... ttatgaacagATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGG
EST: TTCGCCGCCTCTCTCCGTTGAGCTCTCTG ATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGGEST: gi|33659404|gb|CF282017.1|CF282017
genomic: TTCGCCGCCTCTCTCCGTTGAGCTCTCTGgtaagggcta ... ttatgaacagATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGG
EST: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTG ATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGGEST: gi|33808581|gb|CF330176.1|CF330176
genomic: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTGgtaagggcta ... ttatgaacagATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGG
EST: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTG ATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGGEST: gi|88349520|gb|CI653799.1|CI653799
genomic: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTGgtaagggcta ... ttatgaacagATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGG
EST: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTG ATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGGEST: gi|88342124|gb|CI636482.1|CI636482
genomic: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTGgtaagggcta ... ttatgaacagATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGG
EST: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTG ATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGGEST: gi|88458337|gb|CI695723.1|CI695723
genomic: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTGgtaagggcta ... ttatgaacagATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGG
EST: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTG ATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGGEST: gi|88583096|gb|CI700553.1|CI700553
genomic: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTGgtaagggcta ... ttatgaacagATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGG
EST: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTG ATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGAATTGGGEST: gi|88582454|gb|CI699868.1|CI699868
genomic: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTGgtaagggcta ... ttatgaacagATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGG
EST: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTG ATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGGEST: gi|88588559|gb|CI706384.1|CI706384
genomic: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTGgtaagggcta ... ttatgaacagATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGG
EST: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTG ATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGGEST: gi|88440830|gb|CI693400.1|CI693400
genomic: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTGgtaagggcta ... ttatgaacagATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGG
EST: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTG ATTTTCCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGGEST: gi|88376943|gb|CI639268.1|CI639268
genomic: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTGgtaagggcta ... ttatgaacagATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGG
EST: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTG ATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGGEST: gi|88959372|gb|CI685853.1|CI685853
genomic: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTGgtaagggcta ... ttatgaacagATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGG
EST: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTG ATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGGEST: gi|88364521|gb|CI644599.1|CI644599
genomic: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTGgtaagggcta ... ttatgaacagATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGG
EST: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTG ATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGGEST: gi|58683841|gb|CK072528.1|CK072528
genomic: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTGgtaagggcta ... ttatgaacagATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGG
EST: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTG ATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGGEST: gi|88448536|gb|CI693924.1|CI693924
genomic: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTGgtaagggcta ... ttatgaacagATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGG
EST: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTG ATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGGEST: gi|88344646|gb|CI637255.1|CI637255
genomic: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTGgtaagggcta ... ttatgaacagATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGG
EST: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTG ATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGANTTGGGEST: gi|88723267|gb|CI746777.1|CI746777
genomic: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTGgtaagggcta ... ttatgaacagATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGG
EST: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTG ATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGGEST: gi|88336614|gb|CI656885.1|CI656885
genomic: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTGgtaagggcta ... ttatgaacagATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGG
EST: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTG ATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGGEST: gi|163926796|gb|EG715084.1|EG715084
genomic: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTGgtaagggcta ... ttatgaacagATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGG
EST: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTG ATTTTTCCCCGTGCACTACTCAATCTGCTCCGGGCGGGCGAGCGACTTGGGEST: gi|88585605|gb|CI703248.1|CI703248
genomic: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTGgtaagggcta ... ttatgaacagATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGG
EST: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTG ATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGGEST: gi|396941371|gb|HO188580.1|HO188580
genomic: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTGgtaagggcta ... ttatgaacagATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGG
EST: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTG ATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGG
genomic: CTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTGgtaagggcta ... ttatgaacagATTTTTCCCCGTGCACTACTCGATCTGCTCCGGGCGGGCGAGCGACTTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCCTCCCTCTCTTTCGCTCGTAGCCATCGCTCTCTTCCACTGGTTCGCTCTCTCCGTCAAACCGTTTGGTTTCGCCGCCTCTCTCCGTTGAGCTCTCTGgtaagggctaggttgggcatctccctcccctttctcacctccttcagtttcttctcctctcttcctttgatttgatttgatttcataaatatgctagatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctccc
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttctcc