1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTCGTGAGCTCGCCCGCCGCCTGCGCGTCCCCATCCATCCCGGCGAGCGAGCAGGTGCGCCGTCGTTCGTCCAGCTGCTGCTTCGGCCGCATCCATCCTGgtgagcattcgtcccactctacccacccacgcactctcttcctccaattcgcgttaaccctcgtttctctttagactaattcgaggctttttctctcaatttttgccaaaatcttgaattcttaataatatcctaatagctcttttcag
species | Oryza sativa |
transcript | LOC_Os05g12170.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCAGGTGCGCCGTCGTTCGTCCAGCTGCTGCTTCGGCCGCATCCATCCTGCTCTTTTCAGEST: gi|29671008|gb|CB667283.1|CB667283
genomic: GCAGGTGCGCCGTCGTTCGTCCAGCTGCTGCTTCGGCCGCATCCA---T-C-C---T--Ggtgagcattc ... c
EST: GCAGGTGCGCCGTCGTTCGTCCAGCTGCTGCTTCGGCCGCATCCATCCTG GAGAAGTGTTAATCTGACGAACACGTGGGGGCTTGAGCCGCAATGAAGGAGEST: gi|29664499|gb|CB660774.1|CB660774
genomic: GCAGGTGCGCCGTCGTTCGTCCAGCTGCTGCTTCGGCCGCATCCATCCTGgtgagcattc ... ctcttttcagGAGAAGTGTTAATCTGACGAACACGTGGGGGCTTGAGCCGCAATGAAGGAG
EST: GCAGGTGCGCCGTCGTTCGTCCAGCTGCTGCTTCGGCCGCATCCATCCTG GAGAAGTGTTAATCTGACGAACACGTGGGGGCTTGAGCCGCAATGAAGGAG
genomic: GCAGGTGCGCCGTCGTTCGTCCAGCTGCTGCTTCGGCCGCATCCATCCTGgtgagcattc ... ctcttttcagGAGAAGTGTTAATCTGACGAACACGTGGGGGCTTGAGCCGCAATGAAGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCGTGAGCTCGCCCGCCGCCTGCGCGTCCCCATCCATCCCGGCGAGCGAGCAGGTGCGCCGTCGTTCGTCCAGCTGCTGCTTCGGCCGCATCCATCCTGgtgagcattcgtcccactctacccacccacgcactctcttcctccaattcgcgttaaccctcgtttctctttagactaattcgaggctttttctctcaatttttgccaaaatcttgaattcttaataatatcctaatagctcttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT