1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CACCTGCAGCTTCCAGCTTTGCCACATGGACCAGCCGGCGCCGGCGCCGGAGCCGATGCTGCTCGACGCGCAGCCGCCCGCCGCCGTCGCCTGCGACAAGgtatgtgactaaccggatcttggcgtgctgatccgtggttttgcggttctttgctgtgtgctgatttagtgtgctgttcttggtggagcag
species | Oryza sativa |
transcript | LOC_Os05g11730.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGCCGATGCTGCTCGACGCGCAGCCGCCCGCCGCCGTCGCCTGCGACAAG AAGCAGCAGGAGGGGGAGGCGCCGTACGCGGAGGGGAATGACGCGGTGACCEST: gi|58672524|gb|CK061210.1|CK061210
genomic: AGCCGATGCTGCTCGACGCGCAGCCGCCCGCCGCCGTCGCCTGCGACAAGgtatgtgact ... ggtggagcagAAGCAGCAGGAGGGGGAGGCGCCGTACGCGGAGGGGAATGACGCGGTGACC
EST: AGCCGATGCTGCTCGACGCGCAGCCGCCCGCCGCCGTCGCCTGCGACAAG AAGCAGCAGGAGGGGGAGGCGCCGTACGCGGAGGGGAATGACGCGGTGACCEST: gi|88412294|gb|CI573570.1|CI573570
genomic: AGCCGATGCTGCTCGACGCGCAGCCGCCCGCCGCCGTCGCCTGCGACAAGgtatgtgact ... ggtggagcagAAGCAGCAGGAGGGGGAGGCGCCGTACGCGGAGGGGAATGACGCGGTGACC
EST: AGCCGATGCTGCTCGACGCGCAGCCGCCCGCCGACGTAGCCTGCGACAAG AAGCAGCAGGAGGGGGAGGCGCCGTACGCGGAGGGGAATGACGCGGTGACCEST: gi|88392981|gb|CI614863.1|CI614863
genomic: AGCCGATGCTGCTCGACGCGCAGCCGCCCGCCGCCGTCGCCTGCGACAAGgtatgtgact ... ggtggagcagAAGCAGCAGGAGGGGGAGGCGCCGTACGCGGAGGGGAATGACGCGGTGACC
EST: AGCCGATGCTGCTCGACGCGCAGCCGCCCGCCGCCGTCGCCTGCGACAAG AAGCAGAAGGAGGGGGAGGCGCCGTACGCGGAGGGGAATGACGCGGTGACC
genomic: AGCCGATGCTGCTCGACGCGCAGCCGCCCGCCGCCGTCGCCTGCGACAAGgtatgtgact ... ggtggagcagAAGCAGCAGGAGGGGGAGGCGCCGTACGCGGAGGGGAATGACGCGGTGACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACCTGCAGCTTCCAGCTTTGCCACATGGACCAGCCGGCGCCGGCGCCGGAGCCGATGCTGCTCGACGCGCAGCCGCCCGCCGCCGTCGCCTGCGACAAGgtatgtgactaaccggatcttggcgtgctgatccgtggttttgcggttctttgctgtgtgctgatttagtgtgctgttcttggtggagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT