1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CGCTCGCAGGGGCCGCCTCGCCGGCGACCACCACCCGCCGCAGGTCGCGGCCCTCCGGCGCGGGGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTCGAGgtagtagcacacttccgcttccttccctgcaagcgactgagttgcgagttgtagaagtggggatggaggagcagcgctgcgaacggagtagatatgatga...
species | Oryza sativa |
transcript | LOC_Os05g06510.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCCTCCGGCGCGGGGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTCGAG GATGCTGCCGATGTCAGGAATCTCTCCCTTGTATACACGCTTGCCGGAGEST: gi|58671815|gb|CK060501.1|CK060501
genomic: CCCTCCGGCGCGGGGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTCGAGgtagtagcac ... tcttgtgtagGATGCTGCCGATGTCAGGAATCTCTCCCTTGTATACACGCTTGCCGGAG
EST: CCCTCCGGCGCGGGGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTCGAG GATGCTGCCGATGTCAGGAATCTCTCCCTTGTATACACGCTTGCCGGAGEST: gi|88738125|gb|CI761633.1|CI761633
genomic: CCCTCCGGCGCGGGGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTCGAGgtagtagcac ... tcttgtgtagGATGCTGCCGATGTCAGGAATCTCTCCCTTGTATACACGCTTGCCGGAG
EST: CCCTCCGGCGCGGGGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTCGAG GATGCTGCCGATGTCAGGAATCTCTCCCTTGTATACACGCTTGCCGGAGEST: gi|88763987|gb|CI773403.1|CI773403
genomic: CCCTCCGGCGCGGGGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTCGAGgtagtagcac ... tcttgtgtagGATGCTGCCGATGTCAGGAATCTCTCCCTTGTATACACGCTTGCCGGAG
EST: CCCTCCGGCGCGGGGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTCGAG GATGCTGCCGATGTCAGGAATCTCTCCCTTGTATACACGCTTGCCGGAGEST: gi|29661372|gb|CB657647.1|CB657647
genomic: CCCTCCGGCGCGGGGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTCGAGgtagtagcac ... tcttgtgtagGATGCTGCCGATGTCAGGAATCTCTCCCTTGTATACACGCTTGCCGGAG
EST: CCCTCCGGCGCGGGGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTCGAG GATGCTGCCGATGTCAGGAATCTCTCCCTTGTATACACGCTTGCCGGAGEST: gi|86595984|gb|CI290258.1|CI290258
genomic: CCCTCCGGCGCGGGGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTCGAGgtagtagcac ... tcttgtgtagGATGCTGCCGATGTCAGGAATCTCTCCCTTGTATACACGCTTGCCGGAG
EST: CCCTCCGGCGCGGGGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTCGAG GATGCTGCCGATGTCAGGAATCTCTCCCTTGTATACACGCTTGCCGGAG
genomic: CCCTCCGGCGCGGGGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTCGAGgtagtagcac ... tcttgtgtagGATGCTGCCGATGTCAGGAATCTCTCCCTTGTATACACGCTTGCCGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCTCGCAGGGGCCGCCTCGCCGGCGACCACCACCCGCCGCAGGTCGCGGCCCTCCGGCGCGGGGACTGGGTCAAGCTCATCTGCGGCGCCAGCTTCGAGgtagtagcacacttccgcttccttccctgcaagcgactgagttgcgagttgtagaagtggggatggaggagcagcgctgcgaacggagtagatatgatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA