1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CCACCGCGTCCGCCGACGACGTGCTCGCCCTCACCGAGTCCACCTTCGAGAAGGAGGTCGGCCAGGACCGCGCCGCCCTCGTCGAGTTCTACGCGCCATGgtaataagcgatgatggtgtgcgtgcatctttgggtttttcttcttccttttctttttcggatccgcgcggggcgtgtgtgtgttctggatctctgtgat...
species | Oryza sativa |
transcript | LOC_Os05g06430.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAGTTCTACGCGCCATG GTGTGGTCACTGCAAGAAGCTTGCCCCTGAATACGAAAAACTCGGTGCAAGEST: gi|58662435|gb|CK051121.1|CK051121
genomic: GAGTTCTACGCGCCATGgtaataagcg ... ttgttttcagGTGTGGTCACTGCAAGAAGCTTGCCCCTGAATACGAAAAACTCGGTGCAAG
EST: AAGGAGGTCGGCCAGGACCGCGCCGCCCTCGTCGAGTTCTACGCGCCATG GTGTGGTCACTGCAAGAAGCTTGCCCCTGAATATGAAAAACTCGGTGCAAGEST: gi|58608597|gb|CK036630.1|CK036630
genomic: AAGGAGGTCGGCCAGGACCGCGCCGCCCTCGTCGAGTTCTACGCGCCATGgtaataagcg ... ttgttttcagGTGTGGTCACTGCAAGAAGCTTGCCCCTGAATACGAAAAACTCGGTGCAAG
EST: AAGGAGGTCGGCCAGGACCGCGCCGCCCTCGTCGAGTTCTACGCGCCATG GTGTGGTCACTGCAAGAAGCTTGCCCCGTGGATATGAAAAACTCGGTGCAAEST: gi|58684543|gb|CK073230.1|CK073230
genomic: AAGGAGGTCGGCCAGGACCGCGCCGCCCTCGTCGAGTTCTACGCGCCATGgtaataagcg ... ttgttttcagGTGTGGTCACTGCAAGAAGCTTGCCCC-TGAATACGAAAAACTCGGTGCAA
EST: AAGGAGGTCGGCCAGGACCGCGCCGCCCTCGTCGAGTTCTACGCGCCATG GTGTGGTCACTGCAAGAAGCTTGCCCCTGAATATGAAAAACTCGGTGCAAGEST: gi|58653719|gb|CK042399.1|CK042399
genomic: AAGGAGGTCGGCCAGGACCGCGCCGCCCTCGTCGAGTTCTACGCGCCATGgtaataagcg ... ttgttttcagGTGTGGTCACTGCAAGAAGCTTGCCCCTGAATACGAAAAACTCGGTGCAAG
EST: AAGGAGGTCGGCCAGGACCGCGCCGCCCTCGTCGAGTTCTACGCGCCATG GTGTGGTCACTGCAAGAAGCTTGCCCCTGAATATGAAAAACTCGGTGCAAGEST: gi|88692194|gb|CI735769.1|CI735769
genomic: AAGGAGGTCGGCCAGGACCGCGCCGCCCTCGTCGAGTTCTACGCGCCATGgtaataagcg ... ttgttttcagGTGTGGTCACTGCAAGAAGCTTGCCCCTGAATACGAAAAACTCGGTGCAAG
EST: AAGGAGGTCGGCCAGGACCGCGCCGCCCTCGTCGAGTTCTACGCGCCATG GTGTGGTCACTGCAAGAAGCTTGCCCCTGAATACGAAAAACTCGGTGCAAGEST: gi|88732858|gb|CI756035.1|CI756035
genomic: AAGGAGGTCGGCCAGGACCGCGCCGCCCTCGTCGAGTTCTACGCGCCATGgtaataagcg ... ttgttttcagGTGTGGTCACTGCAAGAAGCTTGCCCCTGAATACGAAAAACTCGGTGCAAG
EST: AAGGAGGTCGGCCAGGACCGCGCCGCCCTCGTCGAGTTCTACGCGCCATG GTGTGGTCACTGCAAGAAGCTTGCCCCTGAATACGAAAAACTCGGTGCAAGEST: gi|58654869|gb|CK043549.1|CK043549
genomic: AAGGAGGTCGGCCAGGACCGCGCCGCCCTCGTCGAGTTCTACGCGCCATGgtaataagcg ... ttgttttcagGTGTGGTCACTGCAAGAAGCTTGCCCCTGAATACGAAAAACTCGGTGCAAG
EST: AAGGAGGTCGGCCAGGACCGCGCCGCCCTCGTCGAGTTCTACGCGCCATG GTGTGGTCACTGCAAGAAGCTTGCCCCTGAATATGAAAAACGGGGTGCAAG
genomic: AAGGAGGTCGGCCAGGACCGCGCCGCCCTCGTCGAGTTCTACGCGCCATGgtaataagcg ... ttgttttcagGTGTGGTCACTGCAAGAAGCTTGCCCCTGAATACGAAAAACTCGGTGCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCACCGCGTCCGCCGACGACGTGCTCGCCCTCACCGAGTCCACCTTCGAGAAGGAGGTCGGCCAGGACCGCGCCGCCCTCGTCGAGTTCTACGCGCCATGgtaataagcgatgatggtgtgcgtgcatctttgggtttttcttcttccttttctttttcggatccgcgcggggcgtgtgtgtgttctggatctctgtgat
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgcgggg