1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCGGCTTCTGGCCCCCTCGACCGCCTCAGGTCGCCGCCCTTCGCGCGCACGGCGGCGCGGCACGGGAGCCCTGCTCTTTCCCCATGGAGCCGCTTCGGAGgtcagggtctacctcttccttctttatttttttttctatcgtggaattcttcgttagggatgtgggatgattaaagatgcggatcttttttacccaacta...
species | Oryza sativa |
transcript | LOC_Os05g06330.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGCGGCGCGGCACGGGAGCCCTGCTCTTTCCCCATGGAGCCGCTTCGGAG GGCAGAAGAGGGGCATGTTCATCCAGACGCAGTCGACCCCGAACCCGCAGTEST: gi|88363666|gb|CI609023.1|CI609023
genomic: GGCGGCGCGGCACGGGAGCCCTGCTCTTTCCCCATGGAGCCGCTTCGGAGgtcagggtct ... tgatgggcagGGCAGAAGAGGGGCATGTTCATCCAGACGCAGTCGACCCCGAACCCGCAGT
EST: GGCGGCGCGGCACGGGAGCCCTGCTCTTTACCCATGGAGCCGGTTCGGAG GGCAGAAGAGGGGCATGTTCATCCAGACCCAGTCGACCCCGAACCCGCACTEST: gi|29658152|gb|CB654427.1|CB654427
genomic: GGCGGCGCGGCACGGGAGCCCTGCTCTTTCCCCATGGAGCCGCTTCGGAGgtcagggtct ... tgatgggcagGGCAGAAGAGGGGCATGTTCATCCAGACGCAGTCGACCCCGAACCCGCAGT
EST: GGCGGCGCGGCACGGGAGCCCTGCTCTTTCCCCATGGAGCCGCTTCGGAG GGCAGAAGAGGGGCATGTTCATCCAGACGCAGTCGACCCCGAACCCGCAGTEST: gi|117217055|gb|CT861598.1|CT861598
genomic: GGCGGCGCGGCACGGGAGCCCTGCTCTTTCCCCATGGAGCCGCTTCGGAGgtcagggtct ... tgatgggcagGGCAGAAGAGGGGCATGTTCATCCAGACGCAGTCGACCCCGAACCCGCAGT
EST: GGCGGCGCGGCACGGGAGCCCTGCTCTTTCCCCATGGAGCCGCTTCGGAG GGCAGAAGAGGGGCATGTTCATCCAGACGCAGTCGACCCCGAACCCGCAGTEST: gi|66912666|gb|CX099514.1|CX099514
genomic: GGCGGCGCGGCACGGGAGCCCTGCTCTTTCCCCATGGAGCCGCTTCGGAGgtcagggtct ... tgatgggcagGGCAGAAGAGGGGCATGTTCATCCAGACGCAGTCGACCCCGAACCCGCAGT
EST: GGCGGCGCGGCACGGGAGCCCTGCTCTTTCCCCATGGAGCCGCTTCGGAG GGCAGAAGAGGGGCATGTTCATCCAGACGCAGTCGACCCCGAACCCGCAGTEST: gi|88313997|gb|CI599999.1|CI599999
genomic: GGCGGCGCGGCACGGGAGCCCTGCTCTTTCCCCATGGAGCCGCTTCGGAGgtcagggtct ... tgatgggcagGGCAGAAGAGGGGCATGTTCATCCAGACGCAGTCGACCCCGAACCCGCAGT
EST: GGCGGCGCGGCACGGGAGCCCTGCTCTTTCCCCATGGAGCCGCTTCGGAG GGCAGAAGAGGGGCATGTTCATCCAGACGCAGTCGACCCCGAACCCGCAGTEST: gi|88740984|gb|CI764492.1|CI764492
genomic: GGCGGCGCGGCACGGGAGCCCTGCTCTTTCCCCATGGAGCCGCTTCGGAGgtcagggtct ... tgatgggcagGGCAGAAGAGGGGCATGTTCATCCAGACGCAGTCGACCCCGAACCCGCAGT
EST: GGCGGCGCGGCACGGGAGCCCTGCTCTTTCCCCATGGAGCCGCTTCGGAG GGCAGAAGAGGGGCATGTTCATCCAGACGCAGTCGACCCCGAACCCGCAGTEST: gi|88743202|gb|CI766710.1|CI766710
genomic: GGCGGCGCGGCACGGGAGCCCTGCTCTTTCCCCATGGAGCCGCTTCGGAGgtcagggtct ... tgatgggcagGGCAGAAGAGGGGCATGTTCATCCAGACGCAGTCGACCCCGAACCCGCAGT
EST: GGCGGCGCGGCACGGGAGCCCTGCTCTTTCCCCATGGAGCCGCTTCGGAG GGCAGAAGAGGGGCATGTTCATCCAGACGCAGTCGACCCCGAACCCGCAGTEST: gi|218500799|gb|FG959596.1|FG959596
genomic: GGCGGCGCGGCACGGGAGCCCTGCTCTTTCCCCATGGAGCCGCTTCGGAGgtcagggtct ... tgatgggcagGGCAGAAGAGGGGCATGTTCATCCAGACGCAGTCGACCCCGAACCCGCAGT
EST: GGCGGCGCGGCACGGGAGCCCTGCTCTTTCCCCATGGAGCCGCTTCGGAG GGCAGAAGAGGGGCATGTTCATCCAGACGCAGTCGAGCCCGAACCCGCAGTEST: gi|33801514|gb|CF326629.1|CF326629
genomic: GGCGGCGCGGCACGGGAGCCCTGCTCTTTCCCCATGGAGCCGCTTCGGAGgtcagggtct ... tgatgggcagGGCAGAAGAGGGGCATGTTCATCCAGACGCAGTCGACCCCGAACCCGCAGT
EST: GCCGCTTCGGAG GGCAGAAGAGGGGCATGTTCATCCAGACGCAGTCGACCCCGAACCCGCAGT
genomic: GCCGCTTCGGAGgtcagggtct ... tgatgggcagGGCAGAAGAGGGGCATGTTCATCCAGACGCAGTCGACCCCGAACCCGCAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGGCTTCTGGCCCCCTCGACCGCCTCAGGTCGCCGCCCTTCGCGCGCACGGCGGCGCGGCACGGGAGCCCTGCTCTTTCCCCATGGAGCCGCTTCGGAGgtcagggtctacctcttccttctttatttttttttctatcgtggaattcttcgttagggatgtgggatgattaaagatgcggatcttttttacccaacta
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