1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CTTCTTCTCACGTCTCTCTCTCTGAATCCAGATTTTTTTTTGTTGGTTCCATCCTCTCTCCTGCTTCAGATCAGGGTGGCCATCTCGCTTGAATCTGCAGgtgcgtgcggaatttcgatttttgtttttacttttattttgtgcacatccttttcttgagaggagaggtggcggcatggtggcttcttgggtcggatttg...
species | Oryza sativa |
transcript | LOC_Os05g05590.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTCTCTCCTGCTTCACATCAGGGTGGCCATCTCGCTTGAATCTGCAG GGTGAGCTGAGGAGGATCCACTGAGGTGGCGGCGGTCGAGATGGGGCTGGAEST: gi|29628630|gb|CB633641.1|CB633641
genomic: CTCTCTCCTGCTTCAGATCAGGGTGGCCATCTCGCTTGAATCTGCAGgtgcgtgcgg ... attctgccagGGTGAGCTGAGGAGGATCCACTGAGGTGGCGGCGGTCGAGATGGGGCTGGA
EST: ATCCTCTCTCCTGCTTCAGATCAGGGTGGCCATCTCGCTTGAATCTGCAG GGTGAGCTGAGGAGGATCCACTGAGGTGGCGGCGGTCGAGATGGGGCTGGAEST: gi|58663671|gb|CK052357.1|CK052357
genomic: ATCCTCTCTCCTGCTTCAGATCAGGGTGGCCATCTCGCTTGAATCTGCAGgtgcgtgcgg ... attctgccagGGTGAGCTGAGGAGGATCCACTGAGGTGGCGGCGGTCGAGATGGGGCTGGA
EST: ATCCTCTCTCCTGCTTCAGATCAGGGTGGCCATCTCGCTTGAATCTGCAG GGTGAGCTGAGGAGGATCCACTGAGGTGGCGGCGGTCGAGATGGGGCTGGAEST: gi|88501783|gb|CI695221.1|CI695221
genomic: ATCCTCTCTCCTGCTTCAGATCAGGGTGGCCATCTCGCTTGAATCTGCAGgtgcgtgcgg ... attctgccagGGTGAGCTGAGGAGGATCCACTGAGGTGGCGGCGGTCGAGATGGGGCTGGA
EST: ATCCTCTCTCCTGCTTCAGATCAGGGTGGCCATCTCGCTTGAATCTGCAG GGTGAGCTGAGGAGGATCCACTGAGGTGGCGGCGGTCGAGATGGGGCTGGAEST: gi|88427391|gb|CI569429.1|CI569429
genomic: ATCCTCTCTCCTGCTTCAGATCAGGGTGGCCATCTCGCTTGAATCTGCAGgtgcgtgcgg ... attctgccagGGTGAGCTGAGGAGGATCCACTGAGGTGGCGGCGGTCGAGATGGGGCTGGA
EST: ATCCTCTCTCCTGCTTCAGATCAGGGTGGCCATCTCGCTTGAATCTGCAG GGTGAGCTGAGGAGGATCCACTGAGGTGGCGGCGGTCGAGATGGGGCTGGAEST: gi|29633364|gb|CB638373.1|CB638373
genomic: ATCCTCTCTCCTGCTTCAGATCAGGGTGGCCATCTCGCTTGAATCTGCAGgtgcgtgcgg ... attctgccagGGTGAGCTGAGGAGGATCCACTGAGGTGGCGGCGGTCGAGATGGGGCTGGA
EST: ATCCTCTCTCCTGCTTCAGATCAGGGTGGCCATCTCGCTTGAATCTGCAG GGTGAGCTGAGGAGGATCCACTGAGGTGGCGGCGGTCGAGATGGGGCTGGA
genomic: ATCCTCTCTCCTGCTTCAGATCAGGGTGGCCATCTCGCTTGAATCTGCAGgtgcgtgcgg ... attctgccagGGTGAGCTGAGGAGGATCCACTGAGGTGGCGGCGGTCGAGATGGGGCTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTCTTCTCACGTCTCTCTCTCTGAATCCAGATTTTTTTTTGTTGGTTCCATCCTCTCTCCTGCTTCAGATCAGGGTGGCCATCTCGCTTGAATCTGCAGgtgcgtgcggaatttcgatttttgtttttacttttattttgtgcacatccttttcttgagaggagaggtggcggcatggtggcttcttgggtcggatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtggcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggtcgg