1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCTTCTCTTCTCGTGCCTTCTAGGGTTTCCTCTTCCTCGCACCGCGCCGCCTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGgtgcgtaactacgtagtgctatctatgtatgcattttaattaaattactagatcccccattctcttctcctgtttcttcgatcgacgcccacgccgccgt...
species | Oryza sativa |
transcript | LOC_Os05g02310.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAG GTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAEST: gi|88720264|gb|CI743563.1|CI743563
genomic: CTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGgtgcgtaact ... tccatcacagGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCA
EST: CTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAG GTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAEST: gi|4878573|gb|AU062872.1|AU062872
genomic: CTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGgtgcgtaact ... tccatcacagGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCA
EST: CTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAG GTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAEST: gi|88725059|gb|CI748318.1|CI748318
genomic: CTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGgtgcgtaact ... tccatcacagGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCA
EST: CTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAG GTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAEST: gi|88351758|gb|CI617483.1|CI617483
genomic: CTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGgtgcgtaact ... tccatcacagGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCA
EST: CTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAG GTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAEST: gi|88396360|gb|CI598472.1|CI598472
genomic: CTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGgtgcgtaact ... tccatcacagGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCA
EST: CTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAG GTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAEST: gi|33663512|gb|CF294479.1|CF294479
genomic: CTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGgtgcgtaact ... tccatcacagGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCA
EST: CTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAG GTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAEST: gi|699797|gb|D46088.1|D46088
genomic: CTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGgtgcgtaact ... tccatcacagGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCA
EST: CTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAG GTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAEST: gi|86831354|gb|CI297623.1|CI297623
genomic: CTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGgtgcgtaact ... tccatcacagGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCA
EST: CTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAG GTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAEST: gi|88300593|gb|CI587397.1|CI587397
genomic: CTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGgtgcgtaact ... tccatcacagGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCA
EST: CTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAG GTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAEST: gi|88400835|gb|CI616840.1|CI616840
genomic: CTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGgtgcgtaact ... tccatcacagGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCA
EST: CTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAG GTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAEST: gi|88425227|gb|CI564744.1|CI564744
genomic: CTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGgtgcgtaact ... tccatcacagGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCA
EST: CTCGCCTCTTCGTCCCCAGATT-AGATCTACTCCTACTCCTACTACCAAG GTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAEST: gi|88300279|gb|CI584698.1|CI584698
genomic: CTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGgtgcgtaact ... tccatcacagGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCA
EST: CTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAG GTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAEST: gi|117243396|gb|CT843443.1|CT843443
genomic: CTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGgtgcgtaact ... tccatcacagGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCA
EST: CTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAG GTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAEST: gi|3759881|gb|C97139.1|C97139
genomic: CTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGgtgcgtaact ... tccatcacagGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCA
EST: CTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAG GTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAEST: gi|88578597|gb|CI687538.1|CI687538
genomic: CTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGgtgcgtaact ... tccatcacagGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCA
EST: CTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAG GTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAEST: gi|88325992|gb|CI651039.1|CI651039
genomic: CTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGgtgcgtaact ... tccatcacagGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCA
EST: CTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAG GTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCA
genomic: CTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGgtgcgtaact ... tccatcacagGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTCTCTTCTCGTGCCTTCTAGGGTTTCCTCTTCCTCGCACCGCGCCGCCTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGgtgcgtaactacgtagtgctatctatgtatgcattttaattaaattactagatcccccattctcttctcctgtttcttcgatcgacgcccacgccgccgt
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