1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTTTGTCTTTGACAATGCCGCTGCCGCTGCCGGCGACAACAAATGGGTGCCTGGCATTCAAGGAAGTTGCCCTTGTTCATTGGGCTCAACTCAAGATATGgtaattaagctcctactacatgtgctatctttgctcgcactttgccatgaaaatgtatatatacaactagatgaaactgcaaaattcagttatatatata...
species | Oryza sativa |
transcript | LOC_Os05g01256.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: -TGGCATTCAAGGAAGTTGCCCTTGTTCATTGGGCTCAACTCAAGATATG GATGCCAGTTGGGGCAAGAGTAGAAAGCACAAGAGGAGCAATGTGGGCTTGEST: gi|58681624|gb|CK070311.1|CK070311
genomic: CTGGCATTCAAGGAAGTTGCCCTTGTTCATTGGGCTCAACTCAAGATATGgtaattaagc ... tgccatttagGATGCAAGTTGGGGCAAGAGTAGAAAGCACAAGAGGAGCAATGTGGGCTTG
EST: CTGGCATTCAAGGAAGTTGCCCTTGTTCATTGGGCTCAACTCAAGATATG GATGCAAGTTGGGGCAAGAEST: gi|58682626|gb|CK071313.1|CK071313
genomic: CTGGCATTCAAGGAAGTTGCCCTTGTTCATTGGGCTCAACTCAAGATATGgtaattaagc ... tgccatttagGATGCAAGTTGGGGCAAGA
EST: CTGGCATTCAAGGAAGTTGCCCTTGTTCATTGGGCTCAACTCAAGATATG GATGCAAGTTGGGGCAAGAGTAGAAAGCACAAGAGGAGCAATGTGGGCTTGEST: gi|58674551|gb|CK063238.1|CK063238
genomic: CTGGCATTCAAGGAAGTTGCCCTTGTTCATTGGGCTCAACTCAAGATATGgtaattaagc ... tgccatttagGATGCAAGTTGGGGCAAGAGTAGAAAGCACAAGAGGAGCAATGTGGGCTTG
EST: CTGGCATTCAAGGAAGTTGCCCTTGTTCATTGGGCTCAACTCAAGATATG GATGCCAGTTGGGGCAAGAGTAGAAAGCACAAGAGGAGCAATGTGGGCTTG
genomic: CTGGCATTCAAGGAAGTTGCCCTTGTTCATTGGGCTCAACTCAAGATATGgtaattaagc ... tgccatttagGATGCAAGTTGGGGCAAGAGTAGAAAGCACAAGAGGAGCAATGTGGGCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTGTCTTTGACAATGCCGCTGCCGCTGCCGGCGACAACAAATGGGTGCCTGGCATTCAAGGAAGTTGCCCTTGTTCATTGGGCTCAACTCAAGATATGgtaattaagctcctactacatgtgctatctttgctcgcactttgccatgaaaatgtatatatacaactagatgaaactgcaaaattcagttatatatata
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