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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGAGGAGGAGGAGCGGAGTGGTGGCGATGGCGGCGAGGAAGAATGCCGGTGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACCGCGCCCCGCAAGgtttccccattctccggatccgcttccgtcatctcatctcatctcttcccgagcgatagtttcctcgctgcagctgcatcgtcgttgttgaatgaatcttgttcttctcttcttttttttttgggggtatag

Basic information

species Oryza sativa
transcript LOC_Os04g58580.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g58580.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G165535_T05 (Zea mays), 5'ss of exon 2
GAGGAGGAGGAGGAGCGGAGTGGTGGCGATGGCGGCGAGGAAGAATGCCGGTGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACCGCGCCCCGCAAGgtttc-------cccattctccggatccgcttccgtcatctcatctcatctct---tcccgagc----gatagtttcctcgc---tgcagctgcatcgt-cgttgttgaatgaatcttgttcttctcttcttttttttttgggggtatag---------------------
|     ||||||  |  | || | |  |   || ||| ||| |||||| || ||||||||||||||||||||||||||||||||||| ||||| ||||||||  |       ||| | | | ||||||| |||| |      ||||||||      ||  | ||       || |   | ||   |   | |  | ||   || | |  |  | | | |  | || |    |||| || | | |  ||                       
GGACTTGAGGAGCGGGTGGGTTGCGATGGCCGCTGCGGGGAGGAATGCGGGCGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACAGCGCCGCGCAAGgtgccacgagttcccctcccctggatccgtttccctatctcaatctcatcctccggtcttgtgctcggaggagctcagtagccaataggggtagaccgcatgtagctcga-aattgtcgagcgtcgcgctgttttgttctcgtgaaatgattttgtgcttctctggggcag