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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCCTCGACACGCCGTCGCCGCCGAGGGGAGAGAGAGAGAGGCCGCCGGCCGCCGCTACCACTGACCCCCCCCCTCGCCGGAGCGCCCCGTCGCCGGTCGgtacgcgtctctaggcccccctctctctctcgatttgatcggtttgatctgtggtgccctaggtttgatctgtggatttattttttttcttgttttgtgggggtgattag

Basic information

species Oryza sativa
transcript LOC_Os04g57220.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86592570|gb|CI253251.1|CI253251
EST:     TCGCCGGAGCGCCCCTTCGCCGGTCG                         GGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
genomic: TCGCCGGAGCGCCCCGTCGCCGGTCGgtacgcgtct ... gggtgattagGGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: gi|38474282|gb|CF958414.1|CF958414
EST:     CCGCTACCACTGANNNNNNNNNNNTCGCCGGAGCGCCCCGTCGCCGGTCG                         GGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
genomic: CCGCTACCACTGA--CCCCCCCCCTCGCCGGAGCGCCCCGTCGCCGGTCGgtacgcgtct ... gggtgattagGGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: gi|3763269|gb|AU030021.1|AU030021
EST:     TCGCCGGAGCGCCCCGTCGCCGGTCG                         GTTTTGATCGATGGCGTCCAAGA-GATCCTGAAGGAGTTGAAGGACCTGCA
genomic: TCGCCGGAGCGCCCCGTCGCCGGTCGgtacgcgtct ... gggtgattagGGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: gi|4880425|gb|AU064724.1|AU064724
EST:     TCGCCGGAGCGCCCCGTCGCCGGTCG                         GGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
genomic: TCGCCGGAGCGCCCCGTCGCCGGTCGgtacgcgtct ... gggtgattagGGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: gi|58599461|gb|CK009989.1|CK009989
EST:     TCGCCGGAGCGCCCCGTCG-C---CG                         GGTTTGATCGATGGCGTCCAAGAGG-TCCTGAAGGAGTTGAAGGACCTGCA
genomic: TCGCCGGAGCGCCCCGTCGCCGGTCGgtacgcgtct ... gggtgattagGGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: gi|218504761|gb|FG960866.1|FG960866
EST:     TCGCCGGAGCGCCCCGTCG-C---CG                         GGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
genomic: TCGCCGGAGCGCCCCGTCGCCGGTCGgtacgcgtct ... gggtgattagGGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: gi|218491681|gb|FG954119.1|FG954119
EST:     TCGCCGGAGCGCCCCGTCG-C---CG                         GGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
genomic: TCGCCGGAGCGCCCCGTCGCCGGTCGgtacgcgtct ... gggtgattagGGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: gi|1632631|gb|C20360.1|C20360
EST:     CGGAGCGCCCCGTCGCCGGTCG                         GGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
genomic: CGGAGCGCCCCGTCGCCGGTCGgtacgcgtct ... gggtgattagGGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: gi|58593797|gb|CF992105.1|CF992105
EST:     CCGGAGCGCCCCGGTCGGCGGTCG                         GGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
genomic: CCGGAGCGCCCC-GTCGCCGGTCGgtacgcgtct ... gggtgattagGGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: gi|8527887|gb|AU092702.1|AU092702
EST:     TCGCCGGAGANCCCCGTCGCCGGGTCG                         GGTTTGATCGATGNCGTCCAAGAGGATCCCTGAAGGAGTTGAAGGACCTG
genomic: TCGCCGGAGCGCCCCGTCGCC-GGTCGgtacgcgtct ... gggtgattagGGTTTGATCGATGGCGTCCAAGAGGAT-CCTGAAGGAGTTGAAGGACCTG
EST: gi|218488112|gb|FG949877.1|FG949877
EST:     CGCCGGAGCGCCCCGTCGCCGGTCG                         GGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
genomic: CGCCGGAGCGCCCCGTCGCCGGTCGgtacgcgtct ... gggtgattagGGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: gi|29680725|gb|CB677000.1|CB677000
EST:     TCGCCGGAGCGCCCCGTCGCCGGTCG                         GGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
genomic: TCGCCGGAGCGCCCCGTCGCCGGTCGgtacgcgtct ... gggtgattagGGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: gi|86599825|gb|CI255987.1|CI255987
EST:     CGGAGCGCCCCGTCGCCGGTCG                         GGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
genomic: CGGAGCGCCCCGTCGCCGGTCGgtacgcgtct ... gggtgattagGGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
EST: gi|218482001|gb|FG956573.1|FG956573
EST:     TCGCCGGAGCGCCCCGTCG-C---CG                         GGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA
genomic: TCGCCGGAGCGCCCCGTCGCCGGTCGgtacgcgtct ... gggtgattagGGTTTGATCGATGGCGTCCAAGAGGATCCTGAAGGAGTTGAAGGACCTGCA