Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTCGTTCGCGCCGGTGGAGACGGCGAGGATAAAGGTCGTGGGCGTCGGCGGCGGCGGGAACAACGCTGTCAACCGCATGATCGGCAGCGGCCTCCAGgtagggcgggcctaaccttcttgacggaactgggcttcctcggttggcatctagatccatttggtagttatatttgagcataggactgatgaacaagttg...

Basic information

species Oryza sativa
transcript LOC_Os04g56970.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g56970.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G119773_T01 (Zea mays), 5'ss of exon 1
GTGCTCGTTCGCGCCGGTGGAGACGGCGAGGATAAAGGTCGTGGGCGTCGGCGGCGGCGGGAACAACGCTGTCAACCGCATGATCGGCAGCGGCCTCCAGgtagggcgggcctaaccttcttgacggaactgggcttcctcggtt--ggcatctagatccatttggtagttatatttga-gcataggactgat-gaacaagt-tg-
|||||||||||||||||||||||||||  |||||||||| |||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||| |  || || ||      | ||    | | |    ||  ||  || |||  |||   ||| |     |   | ||  |  ||  ||| | |   || | || 
GTGCTCGTTCGCGCCGGTGGAGACGGCCCGGATAAAGGTGGTGGGCGTTGGCGGAGGCGGCAACAACGCCGTCAACCGCATGATCGGCAGCGGCCTCCAGgtagtggcgggctgac------ggcgctctttgcccgtttcattttgggaatcgggattgttttcgcccccaagctggatacgcagatctgcttgtgtaaatatga

upper sequence: LOC_Os04g56970.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA18G10030.1 (Glycine max), 5'ss of exon 1
GTGCTCGTTCGCGCCGGTGGAGACGGCGAGGATAAAGGTCGTGGGCGTCGGCGGCGGCGGGAACAACGCTGTCAACCGCATGATCGGCAGCGGCCTCCAGgtagggcgggcctaaccttcttgacggaactgggcttcc-tcggttggc-atctagatccatttggtagttatatttgagcataggactgatgaacaagttg---
 ||||| ||| || | || || |  || | ||| ||||| || || || ||||||||||| ||||| ||||| ||||||||||||||  ||||  | || ||  |     | |  ||   |||     |||     ||  |  || ||  || ||    || |  |   || | |      |||    || ||     |||    
CTGCTCCTTCTCGACAGTCGACAGCGCTAAGATTAAGGTTGTCGGTGTTGGCGGCGGCGGCAACAATGCTGTTAACCGCATGATCGGTTGCGGATTGCACgtgagtttttcttttcccatttgcatttactcaatatctgttagtcggttatttatgaacaatgtgagattgtgtg-----ataactttggtgggtttgttttta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29655620|gb|CB651895.1|CB651895
EST:     GCGGCGGCGGGAACAACGCTGTCAACCGCATGATCGGCAGCGGCCTCCAG                         GGCATCGAATTTTATGCCATAAACACAGATTCCCAGGCGCTTTTGAATTCG
genomic: GCGGCGGCGGGAACAACGCTGTCAACCGCATGATCGGCAGCGGCCTCCAGgtagggcggg ... acaatttcagGGCATCGAATTTTATGCCATAAACACAGATTCCCAGGCGCTTTTGAATTCG
EST: gi|88725876|gb|CI747388.1|CI747388
EST:     GCGGCGGCGGGAACAACGCTGTCAACCGCATGATCGGCAGCGGCCTCCAG                         GGCATCGAATTTTATGCCATAAACACAGATTCCCAGGCGCTTTTGAATTCG
genomic: GCGGCGGCGGGAACAACGCTGTCAACCGCATGATCGGCAGCGGCCTCCAGgtagggcggg ... acaatttcagGGCATCGAATTTTATGCCATAAACACAGATTCCCAGGCGCTTTTGAATTCG
EST: gi|29655649|gb|CB651924.1|CB651924
EST:     GCGGCGGCGGGAACAACGCTGTCAACCGCATGATCGGCAGCGGCCTCCAG                         GGCATCGAATTTTATGCCATAAACACAGATTCCCAGGCGCTTTTGAATTCG
genomic: GCGGCGGCGGGAACAACGCTGTCAACCGCATGATCGGCAGCGGCCTCCAGgtagggcggg ... acaatttcagGGCATCGAATTTTATGCCATAAACACAGATTCCCAGGCGCTTTTGAATTCG
EST: gi|58687955|gb|CK076642.1|CK076642
EST:     GCGGCGGCGGGAACAACGCTGTCAACCGCATGATCGGCAGCGGCCTCCAG                         GGCATCGAATTTTATGCCATAAACACAGATTCCCAGGCGCTTTTGAATTCG
genomic: GCGGCGGCGGGAACAACGCTGTCAACCGCATGATCGGCAGCGGCCTCCAGgtagggcggg ... acaatttcagGGCATCGAATTTTATGCCATAAACACAGATTCCCAGGCGCTTTTGAATTCG
EST: gi|86885639|gb|CI309766.1|CI309766
EST:     GCGGCGGCGGGAACAACGCTGTCAACCGCATGATCGGCAGCGGCCTCCAG                         GGCATCGAATTTTATGCCATAAACACAGATTCCCAGGCGCTTTTGAATTCG
genomic: GCGGCGGCGGGAACAACGCTGTCAACCGCATGATCGGCAGCGGCCTCCAGgtagggcggg ... acaatttcagGGCATCGAATTTTATGCCATAAACACAGATTCCCAGGCGCTTTTGAATTCG
EST: gi|58688695|gb|CK077382.1|CK077382
EST:     GCGGCGGCGGGAACAACGCTGTCAACCGCATGATCGGCAGCGGCCTCCAG                         GGCATCGAATTTTATGCCATAAACACAGATTCCCAGGCGCTTTTGAATTCG
genomic: GCGGCGGCGGGAACAACGCTGTCAACCGCATGATCGGCAGCGGCCTCCAGgtagggcggg ... acaatttcagGGCATCGAATTTTATGCCATAAACACAGATTCCCAGGCGCTTTTGAATTCG
EST: gi|29655650|gb|CB651925.1|CB651925
EST:     GCGGCGGCGGGAACAACGCTGTCAACCGCATGATCGGCAGCGGCCTCCAG                         GGCATCGAATTTTATGCCATAAACACAGATTCCCAGGCGCTTTTGAATTCG
genomic: GCGGCGGCGGGAACAACGCTGTCAACCGCATGATCGGCAGCGGCCTCCAGgtagggcggg ... acaatttcagGGCATCGAATTTTATGCCATAAACACAGATTCCCAGGCGCTTTTGAATTCG
EST: gi|88316287|gb|CI621526.1|CI621526
EST:     GCGGCGGCGGGAACAACGATGTCAACCGAATGATCGGCAGCGGC-TCCAG                         GGCATCGAATTTTATGACATAAACACAGATTCCCAGGCGCTTTTGAATTCG
genomic: GCGGCGGCGGGAACAACGCTGTCAACCGCATGATCGGCAGCGGCCTCCAGgtagggcggg ... acaatttcagGGCATCGAATTTTATGCCATAAACACAGATTCCCAGGCGCTTTTGAATTCG
EST: gi|88721274|gb|CI744573.1|CI744573
EST:     GCGGCGGCGGGAACAACGCTGTCAACCGCATGATCGGCAGCGGCCTCCAG                         GGCATCGAATTTTATGCCATAAACACAGATTCCCAGGCGCTTTTGAATTCG
genomic: GCGGCGGCGGGAACAACGCTGTCAACCGCATGATCGGCAGCGGCCTCCAGgtagggcggg ... acaatttcagGGCATCGAATTTTATGCCATAAACACAGATTCCCAGGCGCTTTTGAATTCG