1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CCATCCGATCCATCGATCGATCGATCGCCGCAAGACTGCTTCGGGTTTTTTTTTGCTCTTGCTCCGATCGACTGCGTGCGCCTCGAATCGAAATCTCGAGgtgggtgtgtggcgcgatttcgtatagcttgcgtgcgatttttggactgggtttgcgaggggaaagatagggagccctaggtttgttgattgccttggct...
species | Oryza sativa |
transcript | LOC_Os04g53190.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: NNNNGCTCTTGCTCCGATCGACTGCGTGCGCCTCGAATCGAAATCTCGAG TGATATCACGCGGGAGTTGATCCAGACTTAAACCGGATTGCCTGAGAAGTTEST: gi|58609578|gb|CK037611.1|CK037611
genomic: TTTTGCTCTTGCTCCGATCGACTGCGTGCGCCTCGAATCGAAATCTCGAGgtgggtgtgt ... tttttcgcagTGATATCACGCGGGAGTTGATCCAGACTTAAACCGGATTGCCTGAGAAGTT
EST: NNNNGCTCTTGCTCCGATCGACTGCGTGCGCCTCGAATCGAAATCTCGAG TGATATCGCGCGGGAGTTGATCCAGACTTAAACCGGATTGCCTGAGAAGTT
genomic: TTTTGCTCTTGCTCCGATCGACTGCGTGCGCCTCGAATCGAAATCTCGAGgtgggtgtgt ... tttttcgcagTGATATCACGCGGGAGTTGATCCAGACTTAAACCGGATTGCCTGAGAAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCATCCGATCCATCGATCGATCGATCGCCGCAAGACTGCTTCGGGTTTTTTTTTGCTCTTGCTCCGATCGACTGCGTGCGCCTCGAATCGAAATCTCGAGgtgggtgtgtggcgcgatttcgtatagcttgcgtgcgatttttggactgggtttgcgaggggaaagatagggagccctaggtttgttgattgccttggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcgaggg