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ACCTCGAGCCCCCAGGTCCGCCTCGCCTCTCCGTCGCTTGCCGCCGCCCGCAGTGGTCGCCGGCCGCGCGGGGCTTCGCCGGTGTCGCTTCCTCGTTTGGgtaagtcgctcctcactcccgcgtgactctacttcggtgaattttaggtgtggggttgccggggggggttggtaaggctagggtttagggtttatgtgaa...
species | Oryza sativa |
transcript | LOC_Os04g52960.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCCGGTGTCGCTTCCTCGTTTGG AATTAATTAAGCAATACTTAATATGGGCAAGTCAAGCAAGAAATCTGCTGTEST: gi|58692865|gb|CK081552.1|CK081552
genomic: GCCGGTGTCGCTTCCTCGTTTGGgtaagtcgct ... gcttttgtagAATTAATTAAGCAATACTTAATATGGGCAAGTCAAGCAAGAAATCTGCTGT
EST: CAGTGGTCGCCGGCCGCGCGGGGCTTCGCCGGTGTCGCTTCCTCGTTTGG AATTAATTAAGCAATACTTAATATGGGCAAGTCAAGCAAGAAATCTGCTGTEST: gi|218494329|gb|FG970076.1|FG970076
genomic: CAGTGGTCGCCGGCCGCGCGGGGCTTCGCCGGTGTCGCTTCCTCGTTTGGgtaagtcgct ... gcttttgtagAATTAATTAAGCAATACTTAATATGGGCAAGTCAAGCAAGAAATCTGCTGT
EST: GTCGCCGGCCGCGCGGGGCTTCGCCGGTGTCGCTGCCTCGTTTGG AATTAATTAAGCAATACTTAATATGGGGAAGTCAAGCAAGAAATCTGCTGTEST: gi|29633107|gb|CB638116.1|CB638116
genomic: GTCGCCGGCCGCGCGGGGCTTCGCCGGTGTCGCTTCCTCGTTTGGgtaagtcgct ... gcttttgtagAATTAATTAAGCAATACTTAATATGGGCAAGTCAAGCAAGAAATCTGCTGT
EST: CAGTGGTCGCCGGCCGCGCGGGGCTTCGCCGGTGTCGCTTCCTCGTTTGG AATTAATTAAGCAATACTTAATATGGGCAAGTCAAGCAAGAAATCTGCTGTEST: gi|86888434|gb|CI303716.1|CI303716
genomic: CAGTGGTCGCCGGCCGCGCGGGGCTTCGCCGGTGTCGCTTCCTCGTTTGGgtaagtcgct ... gcttttgtagAATTAATTAAGCAATACTTAATATGGGCAAGTCAAGCAAGAAATCTGCTGT
EST: CAGTGGTCGCCGGCCGCGCGGGGCTTCGCCGGTGTCGCTTCCTCGTTTGG AATTAATTAAGCAATACTTAATATGGGCAAGTCAAGCAAGAAATCTGCTGTEST: gi|88349407|gb|CI621517.1|CI621517
genomic: CAGTGGTCGCCGGCCGCGCGGGGCTTCGCCGGTGTCGCTTCCTCGTTTGGgtaagtcgct ... gcttttgtagAATTAATTAAGCAATACTTAATATGGGCAAGTCAAGCAAGAAATCTGCTGT
EST: CAGTGGTCGCCGGCCGCGCGGGGCTTCGCCGGTGTCGCTTCCTCGTTTGG AATTAATTAAGCAATACTTAATATGGGCAAGTCAAGCAAGAAATCTGCTGTEST: gi|88341180|gb|CI639937.1|CI639937
genomic: CAGTGGTCGCCGGCCGCGCGGGGCTTCGCCGGTGTCGCTTCCTCGTTTGGgtaagtcgct ... gcttttgtagAATTAATTAAGCAATACTTAATATGGGCAAGTCAAGCAAGAAATCTGCTGT
EST: TTCGCCGGTGTCGCTTCCTCGTTTGG AATTAATTACGCAATACTTAATATGGGCAAGTCAAGCAAGAAATCTGCTGTEST: gi|88364704|gb|CI612519.1|CI612519
genomic: TTCGCCGGTGTCGCTTCCTCGTTTGGgtaagtcgct ... gcttttgtagAATTAATTAAGCAATACTTAATATGGGCAAGTCAAGCAAGAAATCTGCTGT
EST: CAGTGGTCGCCGGCCGCGCGGGGCTTCGCCGGTGTCGCTTCCTCGTTTGG AATTAATTAAGCAATAGTTAATATGGGCAAGTCAAGCAAGAAATCTGCTGTEST: gi|88358345|gb|CI606854.1|CI606854
genomic: CAGTGGTCGCCGGCCGCGCGGGGCTTCGCCGGTGTCGCTTCCTCGTTTGGgtaagtcgct ... gcttttgtagAATTAATTAAGCAATACTTAATATGGGCAAGTCAAGCAAGAAATCTGCTGT
EST: CAGTGGTCGCCGGCCGCGCGGGGCTTCGCCGGTGTCGCTTCCTCGTTTGG AATTAATTAAGCAATACTTAATATGGGCAAGTCAAGCAAGAAATCTGCTGTEST: gi|58662979|gb|CK051665.1|CK051665
genomic: CAGTGGTCGCCGGCCGCGCGGGGCTTCGCCGGTGTCGCTTCCTCGTTTGGgtaagtcgct ... gcttttgtagAATTAATTAAGCAATACTTAATATGGGCAAGTCAAGCAAGAAATCTGCTGT
EST: GCGGGGCTTCGCCGGTGTCGCTTCCTCGTTTGG AATTAATTAAGCAATACTTAATATGGGGAAGTCAAGCAAGAAATCTGCTGT
genomic: GCGGGGCTTCGCCGGTGTCGCTTCCTCGTTTGGgtaagtcgct ... gcttttgtagAATTAATTAAGCAATACTTAATATGGGCAAGTCAAGCAAGAAATCTGCTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCTCGAGCCCCCAGGTCCGCCTCGCCTCTCCGTCGCTTGCCGCCGCCCGCAGTGGTCGCCGGCCGCGCGGGGCTTCGCCGGTGTCGCTTCCTCGTTTGGgtaagtcgctcctcactcccgcgtgactctacttcggtgaattttaggtgtggggttgccggggggggttggtaaggctagggtttagggtttatgtgaa
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