1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
ATGAGCCATCTCCTCCTCCATGGCGGTGTGCTCCTGCTGCTTCTTGCAGCGGCGGCTGTTCAGGCTCAGCGGGTAGCAACCAAGACTGATCCGACTGAAGgtgagcacgcgtgcccgcctgcttcgattctgatttctgaatgaaacgagagttcttttttttgggtttgtttgagaagcggttcgtcctgatggagcta...
species | Oryza sativa |
transcript | LOC_Os04g52600.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGCGGCTGTTCAGGCTCAGCGGGTAGCAACCAAGACTGATCCGACTGAAG CGGCGGCGCTGAACGCGGTGTTCGCGAAGCTCGGGCAGCAGGCGTCGTTGTEST: gi|88339234|gb|CI633805.1|CI633805
genomic: GGCGGCTGTTCAGGCTCAGCGGGTAGCAACCAAGACTGATCCGACTGAAGgtgagcacgc ... gcatttgcagCGGCGGCGCTGAACGCGGTGTTCGCGAAGCTCGGGCAGCAGGCGTCGTTGT
EST: GGCGGCTGTTCAGGCTCAGCGGGTAGCAACCAAGACTGATCCGACTGAAG CGGCGGCGCTGAACGCGGTGTTCGCGAAGCTCGGGCAGCAGGCGTCGTTGTEST: gi|88341028|gb|CI638584.1|CI638584
genomic: GGCGGCTGTTCAGGCTCAGCGGGTAGCAACCAAGACTGATCCGACTGAAGgtgagcacgc ... gcatttgcagCGGCGGCGCTGAACGCGGTGTTCGCGAAGCTCGGGCAGCAGGCGTCGTTGT
EST: GGCGGCTGTTCAGGCTCAGCGGGTAGCAACCAAGACTGATCCGACTGAAG CGGCGGCGCTGAACGCGGTGTTCGCGAAGCTCGGGCAGCAGGCGTCGTTGTEST: gi|88575494|gb|CI669639.1|CI669639
genomic: GGCGGCTGTTCAGGCTCAGCGGGTAGCAACCAAGACTGATCCGACTGAAGgtgagcacgc ... gcatttgcagCGGCGGCGCTGAACGCGGTGTTCGCGAAGCTCGGGCAGCAGGCGTCGTTGT
EST: GGCGGCTGTTCAGGCTCAGCGGGTAGCAACCAAGACTGATCCGACTGAAG CGGCGGCGCTGAACGCGGTGTTCGCGAAGCTCGGGCAGCAGGCGTCGTTGTEST: gi|88574910|gb|CI666679.1|CI666679
genomic: GGCGGCTGTTCAGGCTCAGCGGGTAGCAACCAAGACTGATCCGACTGAAGgtgagcacgc ... gcatttgcagCGGCGGCGCTGAACGCGGTGTTCGCGAAGCTCGGGCAGCAGGCGTCGTTGT
EST: GGCGGCTGTTCAGGCTCAGCGGGTAGCAACCAAGACTGATCCGACTGAAG CGGCGGCGCTGAACGCGGTGTTCGCGAAGCTCGGGCAGCAGGCGTCGTTGTEST: gi|88327324|gb|CI645102.1|CI645102
genomic: GGCGGCTGTTCAGGCTCAGCGGGTAGCAACCAAGACTGATCCGACTGAAGgtgagcacgc ... gcatttgcagCGGCGGCGCTGAACGCGGTGTTCGCGAAGCTCGGGCAGCAGGCGTCGTTGT
EST: GGCGGCTGTTCAGGCTCAGCGGGTAGCAACCAAGACTGATCCGACTGAAG CGGCGGCGCTGAACGCGGTGTTCGCGAAGCTCGGGCAGCAGGCGTCGTTGTEST: gi|88388983|gb|CI595217.1|CI595217
genomic: GGCGGCTGTTCAGGCTCAGCGGGTAGCAACCAAGACTGATCCGACTGAAGgtgagcacgc ... gcatttgcagCGGCGGCGCTGAACGCGGTGTTCGCGAAGCTCGGGCAGCAGGCGTCGTTGT
EST: GGCGGCTGTTCAGGCTCAGCGGGTAGCAACCAAGACTGATCCGACTGAAG CGGCGGCGCTGAACGCGGTGTTCGCGAAGCTCGGGCAGCAGGCGTCGTTGTEST: gi|88308541|gb|CI650950.1|CI650950
genomic: GGCGGCTGTTCAGGCTCAGCGGGTAGCAACCAAGACTGATCCGACTGAAGgtgagcacgc ... gcatttgcagCGGCGGCGCTGAACGCGGTGTTCGCGAAGCTCGGGCAGCAGGCGTCGTTGT
EST: GGCGGCTGTTCAGGCTCAGCGGGTAGCAACCAAGACTGATCCGACTGAAG CGGCGGCGCTGAACGCGGTGTTCGCGAAGCTCGGGCAGCAGGCGTCGTTGTEST: gi|88332659|gb|CI660177.1|CI660177
genomic: GGCGGCTGTTCAGGCTCAGCGGGTAGCAACCAAGACTGATCCGACTGAAGgtgagcacgc ... gcatttgcagCGGCGGCGCTGAACGCGGTGTTCGCGAAGCTCGGGCAGCAGGCGTCGTTGT
EST: GGCGGCTGTTCAGGCTCAGCGGGTAGCAACCAAGACTGATCCGACTGAAG CGGCGGCGCTGAACGCGGTGTTCGCGAAGCTCGGGCAGCAGGCGTCGTTGT
genomic: GGCGGCTGTTCAGGCTCAGCGGGTAGCAACCAAGACTGATCCGACTGAAGgtgagcacgc ... gcatttgcagCGGCGGCGCTGAACGCGGTGTTCGCGAAGCTCGGGCAGCAGGCGTCGTTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGAGCCATCTCCTCCTCCATGGCGGTGTGCTCCTGCTGCTTCTTGCAGCGGCGGCTGTTCAGGCTCAGCGGGTAGCAACCAAGACTGATCCGACTGAAGgtgagcacgcgtgcccgcctgcttcgattctgatttctgaatgaaacgagagttcttttttttgggtttgtttgagaagcggttcgtcctgatggagcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcccgcc