Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCGCTGCCCCGGCCTCCGGCTCCGCCCGCAAGCCGAACGCCGTGCCTCCGATGGCCGCCGCCGCCGCCACGGCCGATCTCTCTGCCGCCGCCGATAAGgtacggacgcgacgcgctccacggttggtgcccgtgtgtgcttgtttagggctgagctttctagtctgacgtctggtggtttggtgcgctttttgcag

Basic information

species Oryza sativa
transcript LOC_Os04g48410.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g48410.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G175728_T01 (Zea mays), 5'ss of exon 1
CGCCGCTGCCCCGGCCTCCGGCTCCGCCCGCAAGCCGAACGCCGTGCCTCCGATGGCCGCCGCCGCCGCCACGGCCGATCTCTCTGCCGCCGCCGATAAGgtacggacgcg-acgcgctccacggttggt-gcccgtgtgtgcttgtttagggctgagc----tttctagtctgacgtctggtggtttggtgcgctttttgcag
| |||| ||| |  ||||   |||||  |||   || ||||||||||| ||||||||| ||||||| |||||||| |||||||| || ||||  ||||||||  || |||  || |||  ||| |   || | | ||  |       | ||  ||| ||    ||||||  ||   || ||   | |   |  |  | ||||||
CTCCGCCGCCGCCTCCTCGACCTCCGGGCGCGCTCCCAACGCCGTGCCCCCGATGGCCACCGCCGCTGCCACGGCTGATCTCTCGGCTGCCGATGATAAGgtttggccgcttactcgcgtcaccgccagtagtctgttcgcttcgcctgagaactgcgcggcttttctaaccttgtgtgtgtgtgctgctttggtgtgttgcag