1 5' 3' | 2 5' 3' | 3 5' 3' |
GGAGAAGATTATGACTTCCCAAGAGCTATAGCATTTGCTGCTTCTGGCATCCGTAGTTCAGCAGTTGTTGCTGTCACATGTGACAAAGAGATTATCACTGgtaattgtttcttttgactgtttatgctttagcttctatatgtattttttttgttcatttagatgatctttcctcttcatccatcattttctttccattt...
species | Oryza sativa |
transcript | LOC_Os04g46892.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCGTAGTTCAGCAGTTGTTGCTGTCACATGTGACAAAGAGATTATCACTG GTGGGCATGCTGATGGTTCTGTGAAGTTGATCTCCCCAGATGGAGCGAAGAEST: gi|27578170|gb|CB000865.1|CB000865
genomic: CCGTAGTTCAGCAGTTGTTGCTGTCACATGTGACAAAGAGATTATCACTGgtaattgttt ... tcaataatagGTGGGCATGCTGATGGTTCTGTGAAGTTGATCTCCCCAGATGGAGCGAAGA
EST: CCGTAGTTCAGCAGTTGTTGCTGTCACATGTGACAAAGAGATTATCACTG GTGGGCATGCTGATGGTTCTGTGAAGTTGATCTCCCCAGATGGAGCGAAGA
genomic: CCGTAGTTCAGCAGTTGTTGCTGTCACATGTGACAAAGAGATTATCACTGgtaattgttt ... tcaataatagGTGGGCATGCTGATGGTTCTGTGAAGTTGATCTCCCCAGATGGAGCGAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGAAGATTATGACTTCCCAAGAGCTATAGCATTTGCTGCTTCTGGCATCCGTAGTTCAGCAGTTGTTGCTGTCACATGTGACAAAGAGATTATCACTGgtaattgtttcttttgactgtttatgctttagcttctatatgtattttttttgttcatttagatgatctttcctcttcatccatcattttctttccattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctcttc