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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACTACTGGCGGCTCCCCGCCGGCGCCACGCTCAAGGACGTCGTCGTTGTTGTTCGTGCCGACGAGGCGCACCACCGCGACGTCAACCATTTCGCATCGgtacgttcgtgcgtgtgaattcccaatcttgatgtgtgctttgtgtaggtttgtgatgactgaattatttttgcttgtgatgtgcatgcag

Basic information

species Oryza sativa
transcript LOC_Os04g46770.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g46770.1 (Oryza sativa), 5'ss of exon 1
lower sequence: AC233960.1_FGT002 (Zea mays), 5'ss of exon 3
CGACTACTGGCGGCTCCCCGCCGGCGCCACGCTCAAGGACGTCGTCGTTGTTGTTCGTGCCGACGAGGCGCACCACCGCGACGTCAACCATTTCGCATCGgtacgttcgtgcgtgtgaattcccaatcttgatgtgtgctttgtgtaggtt-tgtgatgactgaattatttttgcttg--tgatgtgcatgcag----------
||||||||||| |||||| || |  || ||||||||||| || || || || || ||  |||||||||||||||||||||||||||| || || || |||||| || |   |   ||     | | | |  |   ||    ||| ||      ||  | | ||     |  || |     | || |  | |||           
CGACTACTGGCAGCTCCCAGCTGATGCGACGCTCAAGGATGTGGTTGTCGTGGTGCGCTCCGACGAGGCGCACCACCGCGACGTCAATCACTTTGCGTCGgtatgtccactcccttgg----caagtatcaaatcgtagactgtttaaacgacgtattaaatgccccctcattcccaaaataatataaacgcatgtcttgtttt

upper sequence: LOC_Os04g46770.1 (Oryza sativa), 5'ss of exon 1
lower sequence: EFJ27318 (Selaginella moellendorffii), 5'ss of exon 3
CGACTACTGGCGGCTCCCCGCCGGCGCCACGCTCAAGGACGTCGTCGTTGTTGTTCGTGCCGACGAGGCGCACCACCGCGACGTCAACCATTTCGCATCGgtacgttcgtgcgtgtgaattcccaatcttgatgtgtgctttgtgtaggtttgtgatgactgaattatttttgcttgtgatgtgcatgcag
|||||||||| |||| ||    | ||||| | ||   ||||| |||   ||||| || ||||||||||| |||||||| ||||| ||||| |||||| ||||| |  |  |  ||  |      |     |||| |   | |    || ||  | | | |                               
CGACTACTGGAGGCTGCCAAAGGACGCCAAGATCCGCGACGTTGTCCAAGTTGTCCGCGCCGACGAGGCTCACCACCGGGACGTGAACCACTTCGCAGCGgtaagc-ctcggatgcaaga----agaagggatgggaattctaacgagtttgctcacgcccag----------------------------

upper sequence: LOC_Os04g46770.1 (Oryza sativa), 5'ss of exon 1
lower sequence: EFJ35306 (Selaginella moellendorffii), 5'ss of exon 3
CGACTACTGGCGGCTCCCCGCCGGCGCCACGCTCAAGGACGTCGTCGTTGTTGTTCGTGCCGACGAGGCGCACCACCGCGACGTCAACCATTTCGCATCGgtacgttcgtgcgtgtgaattcccaatcttgatgtgtgctttgtgtaggtttgtgatgactgaattatttttgcttgtgatgtgcatgcag
|||||||||| |||| ||    | ||||| | ||   ||||| |||   ||||| || ||||||||||| |||||||| ||||| ||||| |||||| ||||| |  |  |  ||  ||     |     |||| | | | |    || ||  | | |                                 
CGACTACTGGAGGCTGCCAAAGGACGCCAAGATCCGCGACGTTGTCCAAGTTGTCCGCGCCGACGAGGCTCACCACCGGGACGTGAACCACTTCGCAGCGgtaagc-ctcggatgcaaaa----agaagggatgggagttctaacgagtttgctcacgcgcag----------------------------