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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGGCGCTGTTCGTCCTAGGGTTTGTGTCCCTCTTCACGGGACACATCGTTACGGACGCCGACTGGTCCCGGATCCGGAGCCGGTGGCGATCCAAGCAGgtaattttctgacaacctagaaggtctgtactgtataatttgacgggatttatcggcaccacttagaattcacgtgatattcgagtgcaataggagtaaa...

Basic information

species Oryza sativa
transcript LOC_Os04g46570.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g46570.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G101181_T03 (Zea mays), 5'ss of exon 1
AACGGCGCTGTTCGTCCTAGGGTTTGTGTCCCTCTTCACGGGACACATCGTTACGGACGCCGACTGGTCCCGGATCCGGAGCCGGTGGCGATCCAAGCAGgtaattttctgacaacctagaaggtctgtactgtataatttgacgggatttatcggcaccacttagaattcacgtgatattcgagtgcaataggagtaaa--
||| ||||||||||| |||||||||||||||||||| ||||||||| | || || ||||| |||||| | |||||||| || || |||||| | || ||||||||||  ||   || |    |  ||||||||| |||||  ||    ||| |||   |    |    | |  || |||  |   |  ||  | |  ||   
AACCGCGCTGTTCGTTCTAGGGTTTGTGTCCCTCTTTACGGGACACGTGGTCACCGACGCTGACTGGGCGCGGATCCGCAGTCGATGGCGACCTAAACAGgtaatttgttgcagacttgactg--ctgtactgtctaattccacaaattttgtcgttgcgtggtctcttccgtgttatagcctgatagaagtgaaagaagaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4715473|gb|AU056590.1|AU056590
EST:     GCCGGTGGCGATCCAAGCAG                         GTTAGAAATAACGAGCCCATAAATATTTGGAAATCGAGGTATTCCAACTTG
genomic: GCCGGTGGCGATCCAAGCAGgtaattttct ... caatgtgcagGTTAGAAATAACGAGCCCATAAATATTTGGAAATCGAGGTATTCCAACTTG
EST: gi|33675275|gb|CF303514.1|CF303514
EST:     TTACGGACGCCGACTGGTCCCGGATCCGGAGCCGGTGGCGATCCAAGCAG                         GTTAGAAATAACGAGCCCATAAATATTTGGAAATCGAGGTATTCCAACTTG
genomic: TTACGGACGCCGACTGGTCCCGGATCCGGAGCCGGTGGCGATCCAAGCAGgtaattttct ... caatgtgcagGTTAGAAATAACGAGCCCATAAATATTTGGAAATCGAGGTATTCCAACTTG