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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCCTCTCTCGGTCGCGTGGCTTGAGCGGTGGTGACACCGCTCGCCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgcttcactacgccccaatctttcatggccgagactctcctaaggaccggttggatcgcgtatgagccccccgtgatttttctggagggggga...

Basic information

species Oryza sativa
transcript LOC_Os04g46390.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29637040|gb|CB642049.1|CB642049
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|88433437|gb|CI594251.1|CI594251
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCACTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|88736059|gb|CI759567.1|CI759567
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|84117330|gb|CD151097.1|CD151097
EST:     TCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: TCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|88719888|gb|CI741823.1|CI741823
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|29645124|gb|CB650131.1|CB650131
EST:     TTTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|88672830|gb|CI726946.1|CI726946
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|1631956|gb|C19685.1|C19685
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|88735188|gb|CI758696.1|CI758696
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|88730903|gb|CI754516.1|CI754516
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|88717669|gb|CI741179.1|CI741179
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|33653448|gb|CF276062.1|CF276062
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|14714017|gb|AU197958.1|AU197958
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|88352585|gb|CI624524.1|CI624524
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|88397983|gb|CI585486.1|CI585486
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCAGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|13807441|gb|AU181957.1|AU181957
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCG-C----C-G                         A-TT-CAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|88726075|gb|CI749730.1|CI749730
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|33658091|gb|CF280705.1|CF280705
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|88340296|gb|CI652645.1|CI652645
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|29643291|gb|CB648298.1|CB648298
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|33655861|gb|CF278475.1|CF278475
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|88734961|gb|CI758469.1|CI758469
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|33654185|gb|CF276799.1|CF276799
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|88742159|gb|CI765667.1|CI765667
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|88733935|gb|CI755445.1|CI755445
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|88716970|gb|CI740480.1|CI740480
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|29614042|gb|CB619055.1|CB619055
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|29643236|gb|CB648243.1|CB648243
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|33654740|gb|CF277354.1|CF277354
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|88365054|gb|CI616473.1|CI616473
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAT                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|29678572|gb|CB674847.1|CB674847
EST:     CCTCCGCCCTCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTACCCATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|88728108|gb|CI751618.1|CI751618
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|1631830|gb|C19559.1|C19559
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|4715680|gb|AU056796.1|AU056796
EST:     NCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTNTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|29657304|gb|CB653579.1|CB653579
EST:     CTTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: C-TCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|88406588|gb|CI599081.1|CI599081
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|33657288|gb|CF279902.1|CF279902
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|88736955|gb|CI760463.1|CI760463
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|218494200|gb|FG946885.1|FG946885
EST:     CCTCCGTCCG-CTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|58593485|gb|CF991793.1|CF991793
EST:     CTCCGTCCGCCTCGCCTCCACCAGAGAGG-TCTCTCTGCCGGCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CTCCGTCCGCCTCGCCTCCACC-GAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|88352253|gb|CI613904.1|CI613904
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTA-CG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|88742330|gb|CI765838.1|CI765838
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|29678521|gb|CB674796.1|CB674796
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|29680639|gb|CB676914.1|CB676914
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|88763406|gb|CI772858.1|CI772858
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|88723249|gb|CI746759.1|CI746759
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|33694058|gb|CF322297.1|CF322297
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCTTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|29663531|gb|CB659806.1|CB659806
EST:     CGTCCGCCTCGCCTCCACCGAGAGGTTCTCTC-GCCGTCGATTC-G                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|29639999|gb|CB645008.1|CB645008
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|88316124|gb|CI620402.1|CI620402
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|29668764|gb|CB665039.1|CB665039
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
EST: gi|88762974|gb|CI772530.1|CI772530
EST:     CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAG                         ATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG
genomic: CCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgc ... agttctacagATTTACAGGGAGATTATCTTGTGATCTGTAAACATGTTTGGGCGTGTACCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCCCTCTCTCGGTCGCGTGGCTTGAGCGGTGGTGACACCGCTCGCCTCCGTCCGCCTCGCCTCCACCGAGAGGTTCTCTCTGCCGCCGATTCAGgtacgatcgcttcactacgccccaatctttcatggccgagactctcctaaggaccggttggatcgcgtatgagccccccgtgatttttctggagggggga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acgcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggagggg