1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCTCGCCGCCACCAGCCGTAACTTCCGGCAGGCCGCCAGGCTGCTCGGCCTCGACTCCAAGCTCGAGAAGAGCCTCCTGATCCCGTTCCGCGAGATCAAGgtgagacggggttttttttttttttgattcctgtttccagcttgttttgctgcggttgctggctttgttgtttcatcaggcgtagcgtaaccccgctctctgttcag
species | Oryza sativa |
transcript | LOC_Os04g45970.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCGACTCCAAGCTCGAGAAGAGCCTCCTGATCCCGTTCCGCGAGATCAAG GTGGAATGCACCATCCCCAAAGACGATGGAACCTTGGCGTCCTTCATTGGGEST: gi|29678534|gb|CB674809.1|CB674809
genomic: TCGACTCCAAGCTCGAGAAGAGCCTCCTGATCCCGTTCCGCGAGATCAAGgtgagacggg ... ctctgttcagGTGGAATGCACCATCCCCAAAGACGATGGAACCTTGGCGTCCTTCATTGGG
EST: TCGAGAAGAGCCTCCTGCTCTCGTTCCGCGAGATCAAG GTGGAATGCACCATCCCCAAACATGATGGAACCTTGGCGTCCTTCATTGGG
genomic: TCGAGAAGAGCCTCCTGATCCCGTTCCGCGAGATCAAGgtgagacggg ... ctctgttcagGTGGAATGCACCATCCCCAAAGACGATGGAACCTTGGCGTCCTTCATTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCGCCGCCACCAGCCGTAACTTCCGGCAGGCCGCCAGGCTGCTCGGCCTCGACTCCAAGCTCGAGAAGAGCCTCCTGATCCCGTTCCGCGAGATCAAGgtgagacggggttttttttttttttgattcctgtttccagcttgttttgctgcggttgctggctttgttgtttcatcaggcgtagcgtaaccccgctctctgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA