1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GACGTCGCCGAGGAGAAGGCCGTCATCCCCGCCCCCGCGCCGCCGGCCGAGGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGAgtgagtggctttgctcgctgctataaatttccgtttgatttgctcttgtttggatggtcaagggctgcttgtttgtgtgatggaaaggtggtgagcatgt...
species | Oryza sativa |
transcript | LOC_Os04g45070.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGA AGGTTGCAGATGAACCTCCTGCEST: gi|86884366|gb|CI310950.1|CI310950
genomic: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGAgtgagtggct ... cttcttacagAGGTTGCAGATGAACCTCCTGC
EST: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGA AGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATGEST: gi|87004303|gb|CI298835.1|CI298835
genomic: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGAgtgagtggct ... cttcttacagAGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATG
EST: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGA AGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATGEST: gi|88311646|gb|CI574863.1|CI574863
genomic: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGAgtgagtggct ... cttcttacagAGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATG
EST: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGA AGGTTGCAGATGAAACTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATGEST: gi|88975844|gb|CI024095.1|CI024095
genomic: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGAgtgagtggct ... cttcttacagAGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATG
EST: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGA AGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATGEST: gi|50878545|gb|AF527706.1|AF527706
genomic: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGAgtgagtggct ... cttcttacagAGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATG
EST: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGA AGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATGEST: gi|88827642|gb|CI778207.1|CI778207
genomic: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGAgtgagtggct ... cttcttacagAGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATG
EST: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGA AGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAEST: gi|58693172|gb|CK081859.1|CK081859
genomic: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGAgtgagtggct ... cttcttacagAGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTA
EST: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGA AGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATGEST: gi|29670320|gb|CB666595.1|CB666595
genomic: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGAgtgagtggct ... cttcttacagAGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATG
EST: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGA AGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATGEST: gi|38470437|gb|CF954568.1|CF954568
genomic: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGAgtgagtggct ... cttcttacagAGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATG
EST: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGA AGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATGEST: gi|88404224|gb|CI575712.1|CI575712
genomic: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGAgtgagtggct ... cttcttacagAGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATG
EST: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGA AGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATGEST: gi|88741665|gb|CI765173.1|CI765173
genomic: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGAgtgagtggct ... cttcttacagAGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATG
EST: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGA AGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATGEST: gi|38471661|gb|CF955792.1|CF955792
genomic: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGAgtgagtggct ... cttcttacagAGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATG
EST: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGA AGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATGEST: gi|88445327|gb|CI587221.1|CI587221
genomic: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGAgtgagtggct ... cttcttacagAGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATG
EST: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGA AGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATGEST: gi|87005481|gb|CI285703.1|CI285703
genomic: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGAgtgagtggct ... cttcttacagAGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATG
EST: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGA AGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATGEST: gi|29670321|gb|CB666596.1|CB666596
genomic: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGAgtgagtggct ... cttcttacagAGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATG
EST: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGA AGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATGEST: gi|88406228|gb|CI594008.1|CI594008
genomic: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGAgtgagtggct ... cttcttacagAGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATG
EST: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGA AGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATGEST: gi|89165064|gb|CI255121.1|CI255121
genomic: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGAgtgagtggct ... cttcttacagAGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATG
EST: GCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGA AGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATGEST: gi|88367239|gb|CI564003.1|CI564003
genomic: GCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGAgtgagtggct ... cttcttacagAGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATG
EST: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGA AGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATGEST: gi|58601478|gb|CK012006.1|CK012006
genomic: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGAgtgagtggct ... cttcttacagAGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATG
EST: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGA AGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATGEST: gi|88406404|gb|CI596531.1|CI596531
genomic: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGAgtgagtggct ... cttcttacagAGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATG
EST: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGA AGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATGEST: gi|88405645|gb|CI598925.1|CI598925
genomic: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGAgtgagtggct ... cttcttacagAGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATG
EST: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGA AGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATG
genomic: GGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGAgtgagtggct ... cttcttacagAGGTTGCAGATGAACCTCCTGCCGAGAAACCTGCTCAAGGGGGCTCTAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACGTCGCCGAGGAGAAGGCCGTCATCCCCGCCCCCGCGCCGCCGGCCGAGGAGGAGAAGCCTCCCGTCGACGACTCCAAGGCGCTGGCCATCGTCGAGAgtgagtggctttgctcgctgctataaatttccgtttgatttgctcttgtttggatggtcaagggctgcttgtttgtgtgatggaaaggtggtgagcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggctgc