1 5' 3' | 2 5' 3' | 3 5' 3' |
CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGgtaagcgtcccccgccgcaactaccaccacctccgcccccgccgtcctcgtgctcgtgttcgtcttagtcaagcgcatttctgtgctctgtagccgcgcg...
species | Oryza sativa |
transcript | LOC_Os04g42270.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|88307620|gb|CI644655.1|CI644655
genomic: CCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|38475453|gb|CF959586.1|CF959586
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGT-CGCCGCCG-CGTCCCGGAGAGGTAAGTTCAAGEST: gi|58676524|gb|CK065211.1|CK065211
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|58688984|gb|CK077671.1|CK077671
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGT-CGCCG-CGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|8527945|gb|AU092760.1|AU092760
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CTTCGCGTCCCGCCGNCCGCCGTCCCCGGAGAGGTAAGTTCAAGEST: gi|88429107|gb|CI689987.1|CI689987
genomic: CTTCGCGT-CCGCCG-CCGCCGT-CCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|88354083|gb|CI636281.1|CI636281
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGTTCAAG AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGEST: gi|33685953|gb|CF314192.1|CF314192
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGT-AAGgtaagcgtcc ... gcagttcaagAGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|88826966|gb|CI777531.1|CI777531
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|33674425|gb|CF302664.1|CF302664
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|88592694|gb|CI710816.1|CI710816
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|33692008|gb|CF320247.1|CF320247
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|3767290|gb|AU031400.1|AU031400
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|33828511|gb|CF340074.1|CF340074
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|33827197|gb|CF339405.1|CF339405
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|88338661|gb|CI644118.1|CI644118
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|218488640|gb|FG955525.1|FG955525
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGT-CGCCGCCGCCGNCCCGGAGA-GTCAAG AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGEST: gi|95101610|gb|CI697130.1|CI697130
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGT-AAGgtaagcgtcc ... gcagttcaagAGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|38468469|gb|CF952600.1|CF952600
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGT-CGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|88569976|gb|CI661151.1|CI661151
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|88326375|gb|CI659805.1|CI659805
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|58587085|gb|CF985393.1|CF985393
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCTGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|55441502|gb|CV734073.1|CV734073
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|33829354|gb|CF340500.1|CF340500
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|88329285|gb|CI653197.1|CI653197
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|396941481|gb|HO188690.1|HO188690
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|88581674|gb|CI698877.1|CI698877
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|58586947|gb|CF985255.1|CF985255
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCG-CGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|88432759|gb|CI690605.1|CI690605
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|86894167|gb|CI306093.1|CI306093
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|88571491|gb|CI662864.1|CI662864
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|24208680|gb|AU225707.1|AU225707
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTTCCGCCGCCGCCGTCCCGGAGAGGTAAG AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGEST: gi|4716140|gb|AU057256.1|AU057256
genomic: CGCTTCGCG-TCCGCCGCCGCCGTCCCGGAGAGGTAAGgtaagcgtcc ... gcagttcaagAGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGTTCAAG AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGEST: gi|88375472|gb|CI681245.1|CI681245
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGT-AAGgtaagcgtcc ... gcagttcaagAGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|218499743|gb|FG949520.1|FG949520
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTCAAGEST: gi|88331042|gb|CI638450.1|CI638450
genomic: CGTCCGCCGCCGCCGTCCCGGAGA-G---GT-AAGgtaagcgtcc ... gcagtt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|88742992|gb|CI766500.1|CI766500
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|88432856|gb|CI690707.1|CI690707
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|33656585|gb|CF279199.1|CF279199
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|13806589|gb|AU181577.1|AU181577
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|55441225|gb|CV733928.1|CV733928
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGTTCAAG AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGEST: gi|88324985|gb|CI644999.1|CI644999
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGT-AAGgtaagcgtcc ... gcagttcaagAGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|33827283|gb|CF339451.1|CF339451
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|33828739|gb|CF340189.1|CF340189
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|88827459|gb|CI778024.1|CI778024
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|88302352|gb|CI668198.1|CI668198
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|88338525|gb|CI645779.1|CI645779
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|88766104|gb|CI775194.1|CI775194
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|33656555|gb|CF279169.1|CF279169
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|88358697|gb|CI649246.1|CI649246
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|58594690|gb|CF992998.1|CF992998
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCTGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|88344301|gb|CI655695.1|CI655695
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|38478217|gb|CF962350.1|CF962350
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGT-CGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|33687882|gb|CF316121.1|CF316121
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|55440442|gb|CV733530.1|CV733530
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|88695648|gb|CI737686.1|CI737686
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|88453549|gb|CI680803.1|CI680803
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|88572919|gb|CI664490.1|CI664490
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|88331741|gb|CI640772.1|CI640772
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|88827152|gb|CI777717.1|CI777717
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGTTCAAG AGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAGEST: gi|88577603|gb|CI674201.1|CI674201
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGT-AAGgtaagcgtcc ... gcagttcaagAGGCAGCCCTGTGAAGCTCCAATGGCTCCTAAAG
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|88368782|gb|CI651248.1|CI651248
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|88339646|gb|CI660436.1|CI660436
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|163926729|gb|EG713745.1|EG713745
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|33671911|gb|CF300150.1|CF300150
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|88765347|gb|CI774441.1|CI774441
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAGEST: gi|38479237|gb|CF963370.1|CF963370
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
EST: CGCTTCGCGT-CGCCGCCGCCGTCCCGGAGAGGTAAGTTCAAG
genomic: CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGA-G---G-T-AAGgtaagcgtcc ... gcagt
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCTTCGCGTCCGCCGCCGCCGTCCCGGAGAGGTAAGgtaagcgtcccccgccgcaactaccaccacctccgcccccgccgtcctcgtgctcgtgttcgtcttagtcaagcgcatttctgtgctctgtagccgcgcg
- - - - - - - - - - - - - GAGAGG