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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTAAGAAGGTGAGGCGGATCAGGAGATGGCGTCGAGGACGGCGTCCAAGGACATCATCACGCTGCGGGGCTCCGCCGCCATCGTCAGCGAGTTCTTCGgtagaagccgatctccgcttccgtttcttttattttttttcgccctcggctcctctcacgcgtgcgcgcgcccgataggtgtttgatcgaatgccttttctcgtgtggcag

Basic information

species Oryza sativa
transcript LOC_Os04g40940.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g40940.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G047143_T03 (Zea mays), 5'ss of exon 1
AGTTAAGAAGGTGAGGCGGATCAGGAGATGGCGTCGAGGACGGCGTCCAAGGACATCATCACGCTGCGGGGCTCCGCCGCCATCGTCAGCGAGTTCTTCGgtagaagccgatctccgcttccgtttcttttattttttttcgccctcggctcctctcacgcgtgcgcgcgcccgataggtgtttgatcgaatgccttttctcgtgt-ggcag
    ||| ||| |  | ||||      ||||||||| |  ||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||    |    |||| || ||   | |  | |||  ||||    |                      |||||    ||||  |||   ||||| |    |||  | |||||
GAGGAAGGAGGAGGAGAGGATACCAGAATGGCGTCGCGCTCGGCGTCCAAGGATATCATCACGCTGCGAGGCTCTGCCGCCATCGTCAGCGAGTTCTTCGgtacgcacgcggctcc-ctgccccctttcctgtttagtttctttttt---------------------cgcccatcgggtgcctgacgaaatgcttcgcttcgcatcggcag

upper sequence: LOC_Os04g40940.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G047143_T04 (Zea mays), 5'ss of exon 1
AGTTAAGAAGGTGAGGCGGATCAGGAGATGGCGTCGAGGACGGCGTCCAAGGACATCATCACGCTGCGGGGCTCCGCCGCCATCGTCAGCGAGTTCTTCGgtagaagccgatctccgcttccgtttcttttattttttttcgccctcggctcctctcacgcgtgcgcgcgcccgataggtgtttgatcgaatgccttttctcgtgtggcag
    ||| ||| |  | ||||      ||||||||| |  ||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||    |    |||| || ||   | |  | |||  ||||    |  || | ||    || ||        ||| | |  |    ||| || |          | |||  
GAGGAAGGAGGAGGAGAGGATACCAGAATGGCGTCGCGCTCGGCGTCCAAGGATATCATCACGCTGCGAGGCTCTGCCGCCATCGTCAGCGAGTTCTTCGgtacgcacgcggctcc-ctgccccctttcctgtttagtttcttttttcgcccatcgggtgcctg-------acgaaatgcttcgcttcgcat-cggcagggtacgcggc--

upper sequence: LOC_Os04g40940.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G112072_T03 (Zea mays), 5'ss of exon 1
AGTTAAGAAGGTGAGGCGGATCAGGAGATGGCGTCGAGGACGGCGTCCAAGGACATCATCACGCTGCGGGGCTCCGCCGCCATCGTCAGCGAGTTCTTCGgtagaagccgatctccgcttccgtttcttttattttttttcgccctcggctcctctcacgcgtgcgcgcgcccgataggtgtttgatcgaatgccttttctcgtgt-ggcag
    |||  || |  | ||||      ||||||||| | |||||||||||||| |||||| | ||||| ||||||||||||||||||||||||||||||||||            |||   ||   |      | |   || |||||  ||  |        |||  || |||    || ||||||   ||||| |    |||| | |||||
GAGGAAGGCGGAGGAGAGGATACCAGAATGGCGTCGCGAACGGCGTCCAAGGATATCATCGCTCTGCGAGGCTCCGCCGCCATCGTCAGCGAGTTCTTCGgta------------cgcacgcgccgcc----ctctccctccccctctactgat----tagttgcttgcacccatcgggagtttgacgaaatgcttccgttcgtatcggcag

upper sequence: LOC_Os04g40940.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G047143_T02 (Zea mays), 5'ss of exon 1
AGTTAAGAAGGTGAGGCGGATCAGGAGATGGCGTCGAGGACGGCGTCCAAGGACATCATCACGCTGCGGGGCTCCGCCGCCATCGTCAGCGAGTTCTTCGgtag--aagccgatctccgcttccgtttct-ttta---ttttttttcgccctcggctcctctcacgcgtgcgcgcgcccgataggtgtttgatcgaatgccttttctcgtgtggcag
            |  | ||||      ||||||||| |  ||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||   | || | || | ||  || || || ||||   | |||||||||||   |     || |||        |||     |   |   | |     ||   |      |      
-----------AGGAGAGGATACCAGAATGGCGTCGCGCTCGGCGTCCAAGGATATCATCACGCTGCGAGGCTCTGCCGCCATCGTCAGCGAGTTCTTCGGTACGCACGCGgctccctgccccctttcctgtttagtttcttttttcgcccatcgggtgcctgacgaaatgcttcgcttcgcatcggcagggtacgcggcgaataggtacg------