1 5' 3' | 2 5' 3' | 3 5' 3' |
CGAGAAAGCGAGCAGCTCGAGCTCCGCCGATTCCCACCCGTGGCTCGTCGCCGCCTCCGCCTCCGCTCCTCCCTCCCGCCGCCAAGATGAAGCTCGTCAGgtgaggctccggttcttctccacttcgttctgtcccgtttcgtttccctgtgtgtcttccctttgctgatccgtatggtgcaaattttcccccgcgaatttttttggtgcggatttggggcgtggggggtttcgctgcag
species | Oryza sativa |
transcript | LOC_Os04g39444.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCG-CTTCGCCTCCGCTCCTCCCTCCCGCCGCCAAGATGAAGCTCGTCAG GTTTCTGATGAAGCTGAACAACGAGACGGTCACCATCGAGCTCAAGAACGGEST: gi|25807609|gb|CA763570.1|CA763570
genomic: CCGCCTCCGCCTCCGCTCCTCCCTCCCGCCGCCAAGATGAAGCTCGTCAGgtgaggctcc ... ttcgctgcagGTTTCTGATGAAGCTGAACAACGAGACGGTCACCATCGAGCTCAAGAACGG
EST: GAAGCTCGTCAG GTTTCTGATGAAGCTGAACAACGAGACGGTCACCATCGAGCTCAAGAACGGEST: gi|88589523|gb|CI705411.1|CI705411
genomic: GAAGCTCGTCAGgtgaggctcc ... ttcgctgcagGTTTCTGATGAAGCTGAACAACGAGACGGTCACCATCGAGCTCAAGAACGG
EST: CCGCCTCCGCCTCCGNTCCTCCCTCCCGCCGCCAAGATGAAGCTCGTCAG GTTTCTGATGAAGCTGAACAACGAGACGGTCACCATCGAGCTCAAGAACGGEST: gi|88212938|gb|CI210789.1|CI210789
genomic: CCGCCTCCGCCTCCGCTCCTCCCTCCCGCCGCCAAGATGAAGCTCGTCAGgtgaggctcc ... ttcgctgcagGTTTCTGATGAAGCTGAACAACGAGACGGTCACCATCGAGCTCAAGAACGG
EST: CCGCTCCTCCCTCCCGCCGCCAAGATGAAGCTCGTCAG GTTTCTGATGAAGCTGAACAACGAGACGGTCACCATCGAGCTCAAGAACGGEST: gi|66922077|gb|CX108925.1|CX108925
genomic: CCGCTCCTCCCTCCCGCCGCCAAGATGAAGCTCGTCAGgtgaggctcc ... ttcgctgcagGTTTCTGATGAAGCTGAACAACGAGACGGTCACCATCGAGCTCAAGAACGG
EST: CCGCCTCCGCCTCCGCTCCTCCCTCCCGCCGCCAAGATGAAGCTCGTCAG GTTTCTGATGAAGCTGAACAACGAGACGGTCACCATCGAGCTCAAGAACGG
genomic: CCGCCTCCGCCTCCGCTCCTCCCTCCCGCCGCCAAGATGAAGCTCGTCAGgtgaggctcc ... ttcgctgcagGTTTCTGATGAAGCTGAACAACGAGACGGTCACCATCGAGCTCAAGAACGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGAAAGCGAGCAGCTCGAGCTCCGCCGATTCCCACCCGTGGCTCGTCGCCGCCTCCGCCTCCGCTCCTCCCTCCCGCCGCCAAGATGAAGCTCGTCAGgtgaggctccggttcttctccacttcgttctgtcccgtttcgtttccctgtgtgtcttccctttgctgatccgtatggtgcaaattttcccccgcgaatttttttggtgcggatttggggcgtggggggtttcgctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC