1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ACGCTGGGCGCTTCTTCTTCCCCCGCGCATCGTCCGAAATCCTCCGGATTTTCTGAGGAATCCCCCCGAATTTCCTTGCGTCCCATCATGGCCTCCTCAGgtaattcctccgtgccaattcgtggtattcatcaaaggggggggggggatttctttctcttttttttttcaagcaatggatggtgaatcgagggctaggc...
species | Oryza sativa |
transcript | LOC_Os04g35190.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTCTGAGGAATCCCCCCGAATTTCCTTGCGTCCCATCATGGCCTCCTCAG ATGTCTCCGTTGATGTTCGGCCAGAGTTTAACTCTTTTGATCATTTGAGAAEST: gi|88728328|gb|CI751838.1|CI751838
genomic: TTCTGAGGAATCCCCCCGAATTTCCTTGCGTCCCATCATGGCCTCCTCAGgtaattcctc ... ttttatgcagATGTCTCCGTTGATGTTCGGCCAGAGTTTAACTCTTTTGATCATTTGAGAA
EST: TTCTGAGGAATCCCCCCGAATTTCCTTGCGTCCCATCATGGCCTCCTCAG ATGTCTCCGTTGATGTTCGGCCAGAGTTTAACTCTTTTGATCATTTGAGAAEST: gi|88351668|gb|CI617393.1|CI617393
genomic: TTCTGAGGAATCCCCCCGAATTTCCTTGCGTCCCATCATGGCCTCCTCAGgtaattcctc ... ttttatgcagATGTCTCCGTTGATGTTCGGCCAGAGTTTAACTCTTTTGATCATTTGAGAA
EST: TTCTGAGGAATCCCCCCGAATTTCCTTGCGTCCCATCATGGCCTCCTCAG ATGTCTCCGTTGATGTTCGGCCAGAGTTTAACTCTTTEST: gi|86885671|gb|CI309798.1|CI309798
genomic: TTCTGAGGAATCCCCCCGAATTTCCTTGCGTCCCATCATGGCCTCCTCAGgtaattcctc ... ttttatgcagATGTCTCCGTTGATGTTCGGCCAGAGTTTAACTCTTT
EST: TTCTGAGGAATCCCCCCGAATTTCCTTGCGTCCCATCATGGCCTCCTCAG ATGTCTCCGTTGATGTTCGGCCAGAGTTTAACTCTTTTGATCATTTGAGAAEST: gi|88385826|gb|CI568494.1|CI568494
genomic: TTCTGAGGAATCCCCCCGAATTTCCTTGCGTCCCATCATGGCCTCCTCAGgtaattcctc ... ttttatgcagATGTCTCCGTTGATGTTCGGCCAGAGTTTAACTCTTTTGATCATTTGAGAA
EST: TTCTGAGGAATCCCCCCGAATTTCCTTGCGTCCCATCATGGCCTCCTCAG ATGTCTCCGTTGATGCTCGGCCAGAGTTTAACTCTTTTGATCATTTGAGAAEST: gi|88300350|gb|CI584769.1|CI584769
genomic: TTCTGAGGAATCCCCCCGAATTTCCTTGCGTCCCATCATGGCCTCCTCAGgtaattcctc ... ttttatgcagATGTCTCCGTTGATGTTCGGCCAGAGTTTAACTCTTTTGATCATTTGAGAA
EST: TTCTGAGGAATCCCCCCGAATTTCCTTGCGTCCCATCATGGCCTCCTCAG ATGTCTCCGTTGATGTTCGGCCAGAGTTTAACTCTTTTGATCATTTGAGAAEST: gi|88726924|gb|CI750579.1|CI750579
genomic: TTCTGAGGAATCCCCCCGAATTTCCTTGCGTCCCATCATGGCCTCCTCAGgtaattcctc ... ttttatgcagATGTCTCCGTTGATGTTCGGCCAGAGTTTAACTCTTTTGATCATTTGAGAA
EST: TTCTGAGGAATCCCCCCGAATTTCCTTGCGTCCCATCATGGCCTCCTCAG ATGTCTCCGTTGATGTTCGGCCAGAGTTTAACTCTTTTGATCATTTGAGAAEST: gi|88826697|gb|CI777262.1|CI777262
genomic: TTCTGAGGAATCCCCCCGAATTTCCTTGCGTCCCATCATGGCCTCCTCAGgtaattcctc ... ttttatgcagATGTCTCCGTTGATGTTCGGCCAGAGTTTAACTCTTTTGATCATTTGAGAA
EST: TTCTGAGGAATCCCCCCGAATTTCCTTGCGTCCCATCATGGCCTCCTCAG ATGTCTCCGTTGATGTTCGGCCAGAGTTTAACTCTTTTGATCATTTGAGAAEST: gi|88350496|gb|CI654319.1|CI654319
genomic: TTCTGAGGAATCCCCCCGAATTTCCTTGCGTCCCATCATGGCCTCCTCAGgtaattcctc ... ttttatgcagATGTCTCCGTTGATGTTCGGCCAGAGTTTAACTCTTTTGATCATTTGAGAA
EST: TTCTGAGGAATCCCCCCGAATTTCCTTGCGTCCCATCATGGCCTCCTCAG ATGTCTCCGTTGATGTTCGGCCAGAGTTTAACTCTTTTGATCATTTGAGAAEST: gi|88356057|gb|CI653467.1|CI653467
genomic: TTCTGAGGAATCCCCCCGAATTTCCTTGCGTCCCATCATGGCCTCCTCAGgtaattcctc ... ttttatgcagATGTCTCCGTTGATGTTCGGCCAGAGTTTAACTCTTTTGATCATTTGAGAA
EST: TTCTGAGGAATCCCCCCGAATTTCCTTGCGTCCCATCATGGCCTCCTCAG ATGTCTCCGTTGATGTTCGGCCAGAGTTTAACTCTTTTGATCATTTGAGAAEST: gi|58674542|gb|CK063229.1|CK063229
genomic: TTCTGAGGAATCCCCCCGAATTTCCTTGCGTCCCATCATGGCCTCCTCAGgtaattcctc ... ttttatgcagATGTCTCCGTTGATGTTCGGCCAGAGTTTAACTCTTTTGATCATTTGAGAA
EST: TTCTGAGGAATCCCCCCGAATTTCCTTGCGTCCCATCATGGCCTCCTCAG ATGTCTCCGTTGATGTTCGGCCAGAGTTTAACTCTTTTGATCATTTGAGAAEST: gi|29655901|gb|CB652176.1|CB652176
genomic: TTCTGAGGAATCCCCCCGAATTTCCTTGCGTCCCATCATGGCCTCCTCAGgtaattcctc ... ttttatgcagATGTCTCCGTTGATGTTCGGCCAGAGTTTAACTCTTTTGATCATTTGAGAA
EST: TTCTGAGGAATCCCCCCGAATTTCCTTGCGTCCCATCATGGCCTCCTCAG ATGTCTCCGTTGATGTTCGGCCAGAGTTTAACTCTTTTGATCATTTGAGAAEST: gi|88401432|gb|CI585988.1|CI585988
genomic: TTCTGAGGAATCCCCCCGAATTTCCTTGCGTCCCATCATGGCCTCCTCAGgtaattcctc ... ttttatgcagATGTCTCCGTTGATGTTCGGCCAGAGTTTAACTCTTTTGATCATTTGAGAA
EST: TTCTGAGGAATCCCCCCGAATTTCCTTGCGTCCCATCATGGCCTCCTCAG ATGTCTCCGTTGATGTTCGGCCAGAGTTTAACTCTTTTGATCATTTGAGAAEST: gi|88395679|gb|CI590694.1|CI590694
genomic: TTCTGAGGAATCCCCCCGAATTTCCTTGCGTCCCATCATGGCCTCCTCAGgtaattcctc ... ttttatgcagATGTCTCCGTTGATGTTCGGCCAGAGTTTAACTCTTTTGATCATTTGAGAA
EST: TTCTGAGGAATCCCCCCGAATTTCCTTGCGTCCCATCATGGCCTCCTCAG ATGTCTCCGTTGATGTTCGGCCAGAGTTTAACTCTTTTGATCATTTGAGAAEST: gi|88404589|gb|CI581025.1|CI581025
genomic: TTCTGAGGAATCCCCCCGAATTTCCTTGCGTCCCATCATGGCCTCCTCAGgtaattcctc ... ttttatgcagATGTCTCCGTTGATGTTCGGCCAGAGTTTAACTCTTTTGATCATTTGAGAA
EST: TTCTGAGGAATCCCCCCGAATTTCCTTGCGTCCCATCATGGCCTCCTCAG ATGTCTCCGTTGATGTTCGGCCAGAGTTTAACTCTTTTGATCATTTGAGAA
genomic: TTCTGAGGAATCCCCCCGAATTTCCTTGCGTCCCATCATGGCCTCCTCAGgtaattcctc ... ttttatgcagATGTCTCCGTTGATGTTCGGCCAGAGTTTAACTCTTTTGATCATTTGAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGCTGGGCGCTTCTTCTTCCCCCGCGCATCGTCCGAAATCCTCCGGATTTTCTGAGGAATCCCCCCGAATTTCCTTGCGTCCCATCATGGCCTCCTCAGgtaattcctccgtgccaattcgtggtattcatcaaaggggggggggggatttctttctcttttttttttcaagcaatggatggtgaatcgagggctaggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcctccgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaggggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggggg