Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCGATTTCTCCCTCGCGCCGCCGCCTCCTCCTCACCCTCCCCGCCCCAGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgcgaagctctgaatccatcctctgttcctcgcggtctcgcgtgcgtgccgtgctgcttgctggttgatgctaatctcctcactcgcgtttcgcctgtttgttgttgcag

Basic information

species Oryza sativa
transcript LOC_Os04g35090.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88586676|gb|CI703447.1|CI703447
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|218481193|gb|FG966663.1|FG966663
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|218482287|gb|FG965131.1|FG965131
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|88586980|gb|CI704703.1|CI704703
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGNTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|33692611|gb|CF320850.1|CF320850
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|88580859|gb|CI697816.1|CI697816
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|66915713|gb|CX102561.1|CX102561
EST:     AGGCGCAACCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|88342821|gb|CI640154.1|CI640154
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|88339972|gb|CI650419.1|CI650419
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|55412965|gb|CV725341.1|CV725341
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|88341568|gb|CI641320.1|CI641320
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGNTCGGCGCCCGNCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|88381690|gb|CI682360.1|CI682360
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|86900491|gb|CI298326.1|CI298326
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|88742193|gb|CI765701.1|CI765701
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|88327130|gb|CI652168.1|CI652168
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|218480537|gb|FG944727.1|FG944727
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|88577899|gb|CI674514.1|CI674514
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|88349342|gb|CI678323.1|CI678323
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|88695592|gb|CI737630.1|CI737630
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|88402180|gb|CI615023.1|CI615023
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTATCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|58592650|gb|CF990958.1|CF990958
EST:     GTGCGCAACCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: G-GCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|88331231|gb|CI639642.1|CI639642
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|58594471|gb|CF992779.1|CF992779
EST:     AGGCGCAACCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|88336672|gb|CI643997.1|CI643997
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|88571263|gb|CI662636.1|CI662636
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|88347660|gb|CI655013.1|CI655013
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTT---AG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|88586388|gb|CI704085.1|CI704085
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGGCATG                         ATCATCCCGAAGAAGAACCGNAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|88363378|gb|CI643236.1|CI643236
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|58662116|gb|CK050796.1|CK050796
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|88349311|gb|CI678288.1|CI678288
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|88307444|gb|CI643285.1|CI643285
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|58601701|gb|CK012229.1|CK012229
EST:     AGGCGCAACCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCGCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|88588939|gb|CI706786.1|CI706786
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|218483589|gb|FG966694.1|FG966694
EST:     GTGCGCAACCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: G-GCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|88340297|gb|CI652646.1|CI652646
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAANCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|38473025|gb|CF957157.1|CF957157
EST:     AGGCGCAACCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|33688819|gb|CF317058.1|CF317058
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|218488268|gb|FG947103.1|FG947103
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|33666693|gb|CF297660.1|CF297660
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|33692922|gb|CF321161.1|CF321161
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|55409436|gb|CV721812.1|CV721812
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|88329503|gb|CI648565.1|CI648565
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCACTGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|88346511|gb|CI637357.1|CI637357
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|88333438|gb|CI640470.1|CI640470
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|88321700|gb|CI672841.1|CI672841
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|88575576|gb|CI669721.1|CI669721
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|88414405|gb|CI691569.1|CI691569
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|55432256|gb|CV729148.1|CV729148
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|88355631|gb|CI628915.1|CI628915
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATTCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|88340686|gb|CI647564.1|CI647564
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|88332899|gb|CI639747.1|CI639747
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|88308887|gb|CI654170.1|CI654170
EST:     ACGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGNAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
EST: gi|55438242|gb|CV732416.1|CV732416
EST:     AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATG                         ATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG
genomic: AGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 73 (upstream exon), 49 (downstream exon)
Score: 57

TCTTCGATTTCTCCCTCGCGCCGCCGCCTCCTCCTCACCCTCCCCGCCCCAGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgc ... gttgttgcagATCATCCCGAAGAAGAACCGCAATGAGATCTGCAAGTACCTCTTCCAAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTTCGATTTCTCCCTCGCGCCGCCGCCTCCTCCTCACCCTCCCCGCCCCAGGCGCACCCTACGCTTGGAGCTCGTCCGATCCGCTCGGCGCCCGCCATGgtaaacgcgcgaagctctgaatccatcctctgttcctcgcggtctcgcgtgcgtgccgtgctgcttgctggttgatgctaatctcctcactcgcgtttcgcctgtttgttgttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT