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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGCCATGGAGGGGCAGGGCGCCCCGCTGCTCCCGGAGGCAAGGGAAGCGCCATCGTCGTCGTCGACTCCCACCTCCACGTCTGGGCCTCCCCGCAGCAGgtgcgcgcgcgccctagccgttgttacttacattccccaatttttttgaaggtttgctttgctttacgggtggcgtgtaattcgcgcgtgcag

Basic information

species Oryza sativa
transcript LOC_Os04g32150.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g32150.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G155962_T03 (Zea mays), 5'ss of exon 1
CCGCCATGGAGGGGCAGGGCGCCCCGCTGCTCCCGGAGGCAAGGGAAGCGCCATCGTCGTCGTCGACTCCCACCTCCACGTCTGGGCCTCCCCGCAGCAGgtgcg-----------cgcgcgc---cctagccgttgttacttacattccc----------------------caatttttttgaaggt---ttgctttgctttacgggtggcgtgtaattcgcgcgtgcag
|| |      |   |      |   || ||  ||   | |        | ||  |   ||| ||||||||||||| |||||||||||| | || |||||||||||           |||||||   || ||     |   | |    |||                        |||  || ||  | |   ||  |||  ||||| |||| |    |       |||||||
CCTCTCCACCGCCACCACCACCATTGCCGCCGCCATGGCCGCTTCTTCCTCCTGCAAGGTCATCGACTCCCACCTGCACGTCTGGGCCACGCCACAGCAGgtgcgtaagcaggcaacgcgcgcgagcccagtttccgcgtcctgggctcctggcggcccgcgggggagttcagtaatccttctggggttgttttttttttttttaccggtgactccaaccctatccgtgcag