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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGCGTCCCACACCGCATCGCCGTCCTCCTGCGGCGGTGTGGCGCAGAGGAGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggatccctctagtccctcctccctccctccctccctccccgtcgcgcgcgtgatcttggtttggtagggtgggttcttgcgcgcttcggggttc...

Basic information

species Oryza sativa
transcript LOC_Os04g31070.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g31070.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G026793_T01 (Zea mays), 5'ss of exon 1
-CGGCGTCCCACACCGCATCGCCGTCCTCCTGCGGCGGTGTGGCGCAGAGGAGGAGCAATGGGATGTCGC-CGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggatccctctagtccctcctccctccctccctccctccccgtcgcgcgcgtgatcttggtttggtagggtgggttcttgcgcgcttcggggttc-------
 |  |||  | ||  ||  ||| |     | || || |     |||   |||||||  ||||   || |   ||||||||||||||| |||||||||||||||||| |  | |       ||||||  | ||| ||  || |||  ||||     ||    | || |       | || |||| ||| | ||  |     |        
CCCCCGTGTCGCATGGCGCCGCGGCAGCGCCGCTGCCGCCGCTCGCCC-GGAGGAG-GATGGCCCGTGGGGTGGTGGTGGCCATGGCGTCCACCATCAACAGgtgagcacagcg----gatccctcgcctctcgctgtcttcctgaccgtgagatgct---tttttgcggaaacgtgtcggttgttgggagccacaatcgttggggtaa

upper sequence: LOC_Os04g31070.1 (Oryza sativa), 5'ss of exon 1
lower sequence: AC215690.3_FGT002 (Zea mays), 5'ss of exon 1
-CGGCGTCCCACACCGCATCGCCGTCCTCCTGCGGCGGTGTGGCGCAGAGGAGGAGCAATGGGATGTCGC-CGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggatccctctagtccctcctccctccctccctccctccccgtcgcgcgcgtgatcttggtttggtagggtgggttcttgcgcgcttcggggttc-----
 |  |||  | ||  ||| ||| |     | || || |  |  ||| | |||||||  ||||   || |   ||||||||||||||| |||||||||||||||||| |     |  |   ||||||  | ||| ||  || |||| ||||    ||| |   ||| |     | | || |||||||| | ||  ||   ||      
CCCCCGTGTCGCATGGCACCGCGGCAGCGCCGCTGCCGCCTTTCGC-GCGGAGGAG-GATGGCCCGTGGGGTGGTGGTGGCCATGGCGTCCACCATCAACAGgtgagca----cggcggatccctcgcctctcgctgtcttcctcaccgtgatacgc-tttccttcgcggaattgcgttggttcttgggagccacgatctttggggt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86851131|gb|CI311349.1|CI311349
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGCTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|58657968|gb|CK046648.1|CK046648
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|86888383|gb|CI303665.1|CI303665
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|86902583|gb|CI306386.1|CI306386
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|88359810|gb|CI622500.1|CI622500
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|88364150|gb|CI610494.1|CI610494
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|87015486|gb|CI303092.1|CI303092
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|88448802|gb|CI694209.1|CI694209
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|86888237|gb|CI301929.1|CI301929
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|88724953|gb|CI748212.1|CI748212
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|86894770|gb|CI310168.1|CI310168
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|58695841|gb|CK084528.1|CK084528
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|88468929|gb|CI696937.1|CI696937
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|66947384|gb|AU312228.1|AU312228
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|88410193|gb|CI575791.1|CI575791
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|88720154|gb|CI745244.1|CI745244
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|86894619|gb|CI308311.1|CI308311
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|86901655|gb|CI310417.1|CI310417
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|58674998|gb|CK063685.1|CK063685
EST:     GGAGCAATGGGATGTCGCCGTGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: GGAGCAATGGGATGTCGCCG-GTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|88420232|gb|CI621501.1|CI621501
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAAAAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCATGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|88728843|gb|CI752353.1|CI752353
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|29678746|gb|CB675021.1|CB675021
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|88428524|gb|CI564992.1|CI564992
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|88721566|gb|CI744865.1|CI744865
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGAATGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|33654692|gb|CF277306.1|CF277306
EST:     GGAGCAATGGGATGTCGCCGGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: GGAGCAATGGGATGTCGCC-GGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|87008668|gb|CI302823.1|CI302823
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|86849925|gb|CI301788.1|CI301788
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|29642254|gb|CB647261.1|CB647261
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|428574|gb|D24726.1|D24726
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|88406088|gb|CI593868.1|CI593868
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|58658074|gb|CK046754.1|CK046754
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|88728754|gb|CI752264.1|CI752264
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|88351805|gb|CI624610.1|CI624610
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|88725601|gb|CI748860.1|CI748860
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|58600439|gb|CK010967.1|CK010967
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|88388011|gb|CI590287.1|CI590287
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGACATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|88409647|gb|CI568937.1|CI568937
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCACTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|88363967|gb|CI607277.1|CI607277
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|2310224|gb|C26379.1|C26379
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|88716943|gb|CI740453.1|CI740453
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|86826199|gb|CI311051.1|CI311051
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTGAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|58601251|gb|CK011779.1|CK011779
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCGTGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|33658264|gb|CF280878.1|CF280878
EST:     AGGAGCAATGGGATGTCTCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|58676849|gb|CK065536.1|CK065536
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|87017031|gb|CI286167.1|CI286167
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|88357077|gb|CI615964.1|CI615964
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|88726155|gb|CI749810.1|CI749810
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|88409604|gb|CI568894.1|CI568894
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|58694419|gb|CK083106.1|CK083106
EST:     TGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: TGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|33654571|gb|CF277185.1|CF277185
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|29637948|gb|CB642957.1|CB642957
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|29681825|gb|CB678100.1|CB678100
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|88414934|gb|CI601766.1|CI601766
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|88357206|gb|CI616093.1|CI616093
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|88364368|gb|CI612317.1|CI612317
EST:     GGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACCAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAG
genomic: GGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAAC-AGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAG
EST: gi|88430762|gb|CI596876.1|CI596876
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|88355778|gb|CI624876.1|CI624876
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|88725624|gb|CI748883.1|CI748883
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|86850104|gb|CI303557.1|CI303557
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|86902395|gb|CI304214.1|CI304214
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|163920168|gb|EG709518.1|EG709518
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|33694142|gb|CF322381.1|CF322381
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|29675352|gb|CB671627.1|CB671627
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|86894685|gb|CI308344.1|CI308344
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|29678998|gb|CB675273.1|CB675273
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|86901505|gb|CI308486.1|CI308486
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|88343516|gb|CI621884.1|CI621884
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|11564721|gb|AU165357.1|AU165357
EST:     AGGAGCAATGGGATGTCGCCGGTGGTNGCCATNGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|58679385|gb|CK068072.1|CK068072
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|88399197|gb|CI618387.1|CI618387
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTAC
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTAC
EST: gi|88729064|gb|CI752574.1|CI752574
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|88695831|gb|CI737408.1|CI737408
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|86850987|gb|CI311205.1|CI311205
EST:     AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
EST: gi|33654712|gb|CF277326.1|CF277326
EST:     AGGAGCAATGGGATGTC-CCGGTGGTGGCCATGGCCTCCACCATCAACAG                         GGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA
genomic: AGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 72 (upstream exon), 73 (downstream exon)
Score: 102

CGGCGTCCCACACCGCATCGCCGTCCTCCTGCGGCGGTGTGGCGCAGAGGAGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggat ... ttttttgtagGGTCAAGACTGCTAAGAAGCCCTACACTCCTCCACGTGAAGTTCATCTCCAAGTCAAGCATTCACTGCCACCCCAAAAGCGGGAGATTTTCGATTCGCTT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGGCGTCCCACACCGCATCGCCGTCCTCCTGCGGCGGTGTGGCGCAGAGGAGGAGCAATGGGATGTCGCCGGTGGTGGCCATGGCCTCCACCATCAACAGgtgaccggatccctctagtccctcctccctccctccctccctccccgtcgcgcgcgtgatcttggtttggtagggtgggttcttgcgcgcttcggggttc

- - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctccc