1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CGCGGCGCCGCCGTCGCGGCGGTGGCGCGGCGAGGGTTCGTCTCGTTCGGCGCGGCGGCGGCCGCGCGCTCGCGCGCGGTGCGGTCCGGCGGCTTCTCCGgtaaggccgcacttcccttttttttcccccacccctctctttgtctcgctccagcggcgggtggacttagtcgttgttgtgctgggttagctcgggcatg...
species | Oryza sativa |
transcript | LOC_Os04g30760.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCGCTCGCGCGCGGTGCGGTCCGGCGGCTTCTCCG GCGTGCAGACCCATGTTGCAGCTGTTGAGCAAGCACTTGTGCAAGATGCTAEST: gi|30227133|gb|CB965025.1|CB965025
genomic: GCGCTCGCGCGCGGTGCGGTCCGGCGGCTTCTCCGgtaaggccgc ... ctatctgcagGCGTGCAGACCCATGTTGCAGCTGTTGAGCAAGCACTTGTGCAAGATGCTA
EST: GCGCGCTCGCGCGCGGTGCGGTCCGGCGGC-TCTCCG GCGTGCAGACCCATGTTGCAGCTGTTGAGCAAGCACTTGTGCAAGATGCTAEST: gi|30227817|gb|CB965709.1|CB965709
genomic: GCGCGCTCGCGCGCGGTGCGGTCCGGCGGCTTCTCCGgtaaggccgc ... ctatctgcagGCGTGCAGACCCATGTTGCAGCTGTTGAGCAAGCACTTGTGCAAGATGCTA
EST: GCGCGCTCGCGCGCGGTGCGGTCCGGCGGCTTCTCCG GCGTGCAGACCCATGTTGCAGCTGTTGAGCAAGCACTTGTGCAAGATGCTAEST: gi|23512833|gb|BU672855.1|BU672855
genomic: GCGCGCTCGCGCGCGGTGCGGTCCGGCGGCTTCTCCGgtaaggccgc ... ctatctgcagGCGTGCAGACCCATGTTGCAGCTGTTGAGCAAGCACTTGTGCAAGATGCTA
EST: GCGG-CGCGCGCTCG-GTGCGGTGCGG-CCGGCGGC-TCTCCG GCGTGCA-ACCCATG-TGCAGCTGTTGAAGCAAGCACTTGTGCAAGATGCTEST: gi|30226632|gb|CB964524.1|CB964524
genomic: GCGGCCGCGCGCTCGCGCGCGGTGCGGTCCGGCGGCTTCTCCGgtaaggccgc ... ctatctgcagGCGTGCAGACCCATGTTGCAGCTGTTG-AGCAAGCACTTGTGCAAGATGCT
EST: GTGCGGT-CGGCGGCTT-TCCG GCGTGCAGACCCATGTTGCAGCTGTTGAGCAAGCACTTGTGCAAGATGCTAEST: gi|30227770|gb|CB965662.1|CB965662
genomic: GTGCGGTCCGGCGGCTTCTCCGgtaaggccgc ... ctatctgcagGCGTGCAGACCCATGTTGCAGCTGTTGAGCAAGCACTTGTGCAAGATGCTA
EST: GCGCGCTCGCGCGCGGTGCGGTCCGGCGGCTTCTCCG GCGTGCAGACCCATGTTGCAGCTGTTGAGCAAGCACTTGTGCAAGATGCTAEST: gi|30228838|gb|CB966729.1|CB966729
genomic: GCGCGCTCGCGCGCGGTGCGGTCCGGCGGCTTCTCCGgtaaggccgc ... ctatctgcagGCGTGCAGACCCATGTTGCAGCTGTTGAGCAAGCACTTGTGCAAGATGCTA
EST: GCGCTCGCGCGCGGTGCGGTCCGGCGG-TTCTCCG GCGTGCAGACCCATGTTGCAGCTGTTGAGCAAGCACTTGTGCAAGATGCTAEST: gi|23514324|gb|BU673583.1|BU673583
genomic: GCGCTCGCGCGCGGTGCGGTCCGGCGGCTTCTCCGgtaaggccgc ... ctatctgcagGCGTGCAGACCCATGTTGCAGCTGTTGAGCAAGCACTTGTGCAAGATGCTA
EST: GCGCGCTCGCGCGCGGTGCGGTCCGGCGGCTTCTCCG GCGTGCAGACCCATGTTGCAGCTGTTGAGCAAGCACTTGTGCAAGATGCTAEST: gi|23513544|gb|BU673187.1|BU673187
genomic: GCGCGCTCGCGCGCGGTGCGGTCCGGCGGCTTCTCCGgtaaggccgc ... ctatctgcagGCGTGCAGACCCATGTTGCAGCTGTTGAGCAAGCACTTGTGCAAGATGCTA
EST: GCGCTCGCGCGCGGTGCGGTCCGGCGGCTTCTCCG GCGTGCAGACCCATGTTGCAGCTGTTGAGCAAGCACTTGTGCAAGATGCTA
genomic: GCGCTCGCGCGCGGTGCGGTCCGGCGGCTTCTCCGgtaaggccgc ... ctatctgcagGCGTGCAGACCCATGTTGCAGCTGTTGAGCAAGCACTTGTGCAAGATGCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCGGCGCCGCCGTCGCGGCGGTGGCGCGGCGAGGGTTCGTCTCGTTCGGCGCGGCGGCGGCCGCGCGCTCGCGCGCGGTGCGGTCCGGCGGCTTCTCCGgtaaggccgcacttcccttttttttcccccacccctctctttgtctcgctccagcggcgggtggacttagtcgttgttgtgctgggttagctcgggcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctctctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcgctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcggcg