1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
CCCCGCCGGCGCCGCCCAGCGCCGATCTCCGTCCCGGGGGCAGCAGCGGGCGCCGCCGACCTGCTGCTTCCGCCCGCATCCTCGTCGCCGGTGAGCACCCgtacgcagcatcctctcttccatcccctctctaccccgcaccttttctcttcgccttaacccttagctgaaaccgcatgccgcag
species | Oryza sativa |
transcript | LOC_Os04g14654.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGCCGCCGACCTGCTGCTTCCGCCCGCATCCTCGTCGCCGGTGAGCACCC GTTTGGCCCGGCTCTGAAGTAAGCAGGATTCTGAATCTGAGAACGAGGAGTEST: gi|88443698|gb|CI591923.1|CI591923
genomic: CGCCGCCGACCTGCTGCTTCCGCCCGCATCCTCGTCGCCGGTGAGCACCCgtacgcagca ... catgccgcagGTTTGGCCCGGCTCTGAAGTAAGCAGGATTCTGAATCTGAGAACGAGGAGT
EST: CGCCGCCGACCTGCTGCTTCCGCCCGCATCCTCGTCGCCGGTGAGCACCC GTTTGGCCCGGCTCTGAAGTAAGCAGGATTCTGAATCTGAGAACGAGGAGTEST: gi|117229564|gb|CT859877.1|CT859877
genomic: CGCCGCCGACCTGCTGCTTCCGCCCGCATCCTCGTCGCCGGTGAGCACCCgtacgcagca ... catgccgcagGTTTGGCCCGGCTCTGAAGTAAGCAGGATTCTGAATCTGAGAACGAGGAGT
EST: GGCCGCCGACCTGCTGCTTCCGCCCGCATCCTCGTCGCC-----G----- GTTTGGCCCGGCTCTGAAGTAAGCAGGATTCTGAATCTGAGAACGAGGAGTEST: gi|38471532|gb|CF955663.1|CF955663
genomic: CGCCGCCGACCTGCTGCTTCCGCCCGCATCCTCGTCGCCGGTGAGCACCCgtacgcagca ... catgccgcagGTTTGGCCCGGCTCTGAAGTAAGCAGGATTCTGAATCTGAGAACGAGGAGT
EST: TGCCGCCGACCTGCTGCTTCCGCCCGCATCCTCGTCGCCGGTGAGCACCC GTTTGGCCCGGCTCTGAAGTAAGCAGGATTCTGAATCTGAGAACGAGGAGT
genomic: CGCCGCCGACCTGCTGCTTCCGCCCGCATCCTCGTCGCCGGTGAGCACCCgtacgcagca ... catgccgcagGTTTGGCCCGGCTCTGAAGTAAGCAGGATTCTGAATCTGAGAACGAGGAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCCGCCGGCGCCGCCCAGCGCCGATCTCCGTCCCGGGGGCAGCAGCGGGCGCCGCCGACCTGCTGCTTCCGCCCGCATCCTCGTCGCCGGTGAGCACCCgtacgcagcatcctctcttccatcccctctctaccccgcaccttttctcttcgccttaacccttagctgaaaccgcatgccgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT