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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCACCGACGCCGCCGCGGCCATCGCCGTCGCCGACCGCATGGTCGCGCTCGGCACGCACAACGGCACCCTCCACATCCTCGACTTCCAGGGTAATCAGgtatcgtacccacctctttcccttcacgcatagctcgtagggcggtcgcttgctttgtgggattgggatttctggtaggataccgtggaattggatcgtc...

Basic information

species Oryza sativa
transcript LOC_Os04g11880.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g11880.3 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G040247_T01 (Zea mays), 5'ss of exon 1
CTCCACCGACGCCGCCGCGGCCATCGCCGTCGCCGACCGCATGGTCGCGCTCGGCACGCACAACGGCACCCTCCACATCCTCGACTTCCAGGGTAATCAGgtatcgtacccacctctttccctt-cacgcatagctcgtagggcggtcgcttgctttgtgggattgggatttctggtaggataccgtggaattggatcgtc-
||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||| | |   |  |||    |    | | |    |  |  |    |  |||||  |  |||||  |||       || |  |   | |  |  ||||| |  
CTCCACCGACGCCGCGGCCGCCATCGCCGTCGCCGACCGCATGGTCGCGCTCGGCACTCACAACGGCACGCTCCACATCCTCGACTTCCAGGGCAACCAGgtacccttttcgtctcgccacagggcgctctctccctgcggaattggggcttg--tgatgggaacgggcgaaggtgtggcgttgagggagacgggatcctgg

upper sequence: LOC_Os04g11880.3 (Oryza sativa), 5'ss of exon 1
lower sequence: GLYMA12G08840.1 (Glycine max), 5'ss of exon 1
CTCCACCGACGCCGCCGCGGCCATCGCCGTCGCCGACCGCATGGTCGCGCTCGGCACGCACAACGGCACCCTCCACATCCTCGACTTCCAGGGTAATCAGgt-atcgtacccacctctttcccttcacgcatagctcgtag--ggcggtcgcttgctttgtgggattgggatttctggtaggataccgtggaattggatcgtc
  | |  ||||| ||  ||   ||||||||||| || |||||| |||| |||||||| |||  ||||||| | ||||||||||| || |  || |||||||| |    ||     || |    ||   || ||  | || |  |   ||| |  | ||  || || |  ||  | |  | |       ||||  ||| |    
TGCGAGTGACGCGGCGTCGTGTATCGCCGTCGCGGAGCGCATGATCGCTCTCGGCACTCACGGCGGCACCGTTCACATCCTCGATTTTCTCGGGAATCAGgtcagtcgacgtgtgtcatctgtttgttgcgtaatttgtcgcggagagtctcgcgattactgtgaatttgagctgtttttgctcgaattggagctggtta---