1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GCGATCCCCAGAAGGTCGGCGGCCGCCGTCGCTGCCGTGGTGGCGCTCGCGTCCGTGGCCGCTGTCGCCGGCGAGGTCTTCTTCCAGGAGAAGTTCGACGgtgagtcgccggatctaacaacctgtgtcgtcgtgtaatgtggatccagtagactggtaatgcgtttgaatttttttcgttggttcgttggatgatgacg...
species | Oryza sativa |
transcript | LOC_Os03g61670.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTCCGTGGCCGCTGTCGCCGGCGAGGTCTTCTTCCAGGAGAAGTTCGACG ATGGATGGGAGGATCGGTGGGTCAAATCTGAGTGGAAGAAGGATGACAACAEST: gi|58663372|gb|CK052058.1|CK052058
genomic: GTCCGTGGCCGCTGTCGCCGGCGAGGTCTTCTTCCAGGAGAAGTTCGACGgtgagtcgcc ... gtgaaaacagATGGATGGGAGGATCGGTGGGTCAAATCTGAGTGGAAGAAGGATGACAACA
EST: GTCCGTGGCCGCTGTCGCCGGCGAGGTCTTCTTCCAGGAGAAGTTCGACG ATGGATGGGAGGATCGGTGGGTCAAATCTGAGTGGAAGAAGGATGACAACAEST: gi|58670368|gb|CK059054.1|CK059054
genomic: GTCCGTGGCCGCTGTCGCCGGCGAGGTCTTCTTCCAGGAGAAGTTCGACGgtgagtcgcc ... gtgaaaacagATGGATGGGAGGATCGGTGGGTCAAATCTGAGTGGAAGAAGGATGACAACA
EST: GTCCGTGGCCGCTGTCGCCGGCGAGGTCTTCTTCCAGGAGAAGTTCGACG ATGGATGGGAGGATCGGTGGGTCAAATCTGAGTGGAAGAAGGATGACAACAEST: gi|58661947|gb|CK050627.1|CK050627
genomic: GTCCGTGGCCGCTGTCGCCGGCGAGGTCTTCTTCCAGGAGAAGTTCGACGgtgagtcgcc ... gtgaaaacagATGGATGGGAGGATCGGTGGGTCAAATCTGAGTGGAAGAAGGATGACAACA
EST: GTCCGTGGCCGCTGTCGCCGGCGAGGTCTTCTTCCAGGAGAAGTTCGACG ATGGATGGGAGGATCGGTGGGTCAAATCTGAGTGGAAGAAGGATGACAACAEST: gi|58674022|gb|CK062708.1|CK062708
genomic: GTCCGTGGCCGCTGTCGCCGGCGAGGTCTTCTTCCAGGAGAAGTTCGACGgtgagtcgcc ... gtgaaaacagATGGATGGGAGGATCGGTGGGTCAAATCTGAGTGGAAGAAGGATGACAACA
EST: GTCCGTGGCCGCTGTCGCCGGCGAGGTCTTCTTCCAGGAGAAGTTCGACG ATGGATGGGAGGATCGGTGGGTCAAATCTGAGTGGAAGAAGGATGACAACAEST: gi|58658658|gb|CK047338.1|CK047338
genomic: GTCCGTGGCCGCTGTCGCCGGCGAGGTCTTCTTCCAGGAGAAGTTCGACGgtgagtcgcc ... gtgaaaacagATGGATGGGAGGATCGGTGGGTCAAATCTGAGTGGAAGAAGGATGACAACA
EST: GTCCGTGGCCGCTGTCGCCGGCGAGGTCTTCTTCCAGGAGAAGTTCGACG ATGGATGGGAGGATCGGTGGGTCAAATCTGAGTGGAAGAAGGATGACAACAEST: gi|58672993|gb|CK061679.1|CK061679
genomic: GTCCGTGGCCGCTGTCGCCGGCGAGGTCTTCTTCCAGGAGAAGTTCGACGgtgagtcgcc ... gtgaaaacagATGGATGGGAGGATCGGTGGGTCAAATCTGAGTGGAAGAAGGATGACAACA
EST: GTCCGTGGCCGCTGTCGCCGGCGAGGTCTTCTTCCAGGAGAAGTTCGACG ATGGATGGGAGGATCGGTGGGTCCAATCTGAGTGGAAGAAGGATGACAACA
genomic: GTCCGTGGCCGCTGTCGCCGGCGAGGTCTTCTTCCAGGAGAAGTTCGACGgtgagtcgcc ... gtgaaaacagATGGATGGGAGGATCGGTGGGTCAAATCTGAGTGGAAGAAGGATGACAACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGATCCCCAGAAGGTCGGCGGCCGCCGTCGCTGCCGTGGTGGCGCTCGCGTCCGTGGCCGCTGTCGCCGGCGAGGTCTTCTTCCAGGAGAAGTTCGACGgtgagtcgccggatctaacaacctgtgtcgtcgtgtaatgtggatccagtagactggtaatgcgtttgaatttttttcgttggttcgttggatgatgacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgccgga