1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCTAAGACGACGAGATCCTCGACTAATTGCTTCGTGGCTTCGCTCGTCTGGTTTTCTAAGTgtaagataagcattgccctctcctttgatttcttgaggtggtaaatgtggcagcacttcatgttcagataaaaatctagttttttcctctttctcatgca...
species | Oryza sativa |
transcript | LOC_Os03g58040.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTAATTGCTTCGTGGCTTCGCTCGTCTGGTTTTCTAAGT GTGCGGCTCTGAAGGGGAATTTCGTCGAACAGGATGAATGCGTTGGCAGCGEST: gi|88396587|gb|CI601070.1|CI601070
genomic: CTAATTGCTTCGTGGCTTCGCTCGTCTGGTTTTCTAAGTgtaagataag ... ccgtttccagGTGCGGCTCTGAAGGGGAATTTCGTCGAACAGGATGAATGCGTTGGCAGCG
EST: GAGATCCTCGACTAATTGCTTCGTGGCTTCGCTCGTCTGGTTTTCTAAGT GTGCGGCTCTGAAGGGGAATTTCGTCGAACAGGATGAATGCGTTGGCAGCG
genomic: GAGATCCTCGACTAATTGCTTCGTGGCTTCGCTCGTCTGGTTTTCTAAGTgtaagataag ... ccgtttccagGTGCGGCTCTGAAGGGGAATTTCGTCGAACAGGATGAATGCGTTGGCAGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTAAGACGACGAGATCCTCGACTAATTGCTTCGTGGCTTCGCTCGTCTGGTTTTCTAAGTgtaagataagcattgccctctcctttgatttcttgaggtggtaaatgtggcagcacttcatgttcagataaaaatctagttttttcctctttctcatgca
- - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaggtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaaa