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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGGTCTCGCCGGCAGGCGCGGAGGCGGCGGTCAAGGCCGAGATCATGTCGCATCCACAGTACTCGGCTCTCCTAGCCGCCTACTTAGGCTGCAAAAAGgtgtagtagctaagctagcagatgcatatatttaaacccatgcagatacagacgacaacacgccatgtgctgaccaagctcacggccgtgccggatgtactgaccaagttgattttgttggtttttttatcag

Basic information

species Oryza sativa
transcript LOC_Os03g56110.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g56110.2 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G135447_T01 (Zea mays), 5'ss of exon 1
ACAGGTCTCGCCGGCAGGCGCGGAGGCGG---CGGTCAAGGCCGAGATCATGTCGCATCCACAGTACTCGGCTCTCCTAGCCGCCTACTTAGGCTGCAAAAAGgtgtagta--gctaagctagcagatgcat--atatttaaacccatgca-gatacagacgacaacacgccatgtgctgaccaagctcacggccgtgccggatgtactgaccaagttgattttgttggtttttttatcag
   |    || |||  |  | ||| || |   |  ||||||||  |||||||||||| || ||||||||||| ||||| ||||||||||||| |||| ||||||| |||||   ||   | ||     ||||  ||    |   |  |||  ||    || ||   || |   |      |   |    |    | ||| | |   ||||       ||   | |   || | ||||    
---GTCGCCGGCGGTGGATGGGGATGCCGACGCCATCAAGGCCAGGATCATGTCGCACCCCCAGTACTCGGCCCTCCTCGCCGCCTACTTAGACTGCCAAAAGgt-tagtacgactgtacgagtgagagcatccatgcacaggactttgcttgaccaggaagaactcaggatttacatatatataaaataaaatcttgctg-accaactgtatgtcatggactcgactgtatatttag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13896139|gb|AU182475.1|AU182475
EST:     CGCATCCACAGTACTCGGCTCTCCTAGCCGCCTACTTAGGCTGCANAAAG                         GTCGGGGCGCCGCCGGATGTACTGACCAAGCTCAC
genomic: CGCATCCACAGTACTCGGCTCTCCTAGCCGCCTACTTAGGCTGCAAAAAGgtgtagtagc ... tttttatcagGTCGGGGCGCCGCCGGATGTACTGACCAAGCTCAC